ArticleNucleic acids research2009
Update of KDBI: Kinetic Data of Bio-molecular Interaction database.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
13 citing papers in PubMed.
- Binding Curve Viewer: Visualizing the Equilibrium and Kinetics of Protein-Ligand Binding and Competitive Binding.Journal of chemical information and modeling · 2024Article
- Machine learning methods for developments of binding kinetic models in predicting protein-ligand dissociation rate constants.Smart molecules : open access · 2023Article
- Public Data Set of Protein-Ligand Dissociation Kinetic Constants for Quantitative Structure-Kinetics Relationship Studies.ACS omega · 2022Article
- Progressing Towards a Human-Centric Approach in Cancer Research.Frontiers in oncology · 2022Review
- Cooperatively enhanced reactivity and "stabilitaxis" of dissociating oligomeric proteins.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
- KOFFI and Anabel 2.0-a new binding kinetics database and its integration in an open-source binding analysis software.Database : the journal of biological databases and curation · 2019Article
- SABIO-RK: an updated resource for manually curated biochemical reaction kinetics.Nucleic acids research · 2018Article
- A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks.Briefings in bioinformatics · 2017Article
- Flux Control in Glycolysis Varies Across the Tree of Life.Journal of molecular evolution · 2016Article
- An integrated mathematical model of thrombin-, histamine-and VEGF-mediated signalling in endothelial permeability.BMC systems biology · 2011Article
- Drug-target residence time: critical information for lead optimization.Current opinion in chemical biology · 2010Review
- Designing and encoding models for synthetic biology.Journal of the Royal Society, Interface · 2009Review
- A framework for evolutionary systems biology.BMC systems biology · 2009Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Knowledge of the kinetics of biomolecular interactions is important for facilitating the study of cellular processes and underlying molecular events, and is essential for quantitative study and simulation of biological systems. Kinetic Data of Bio-molecular Interaction database (KDBI) has been developed to provide information about experimentally determined kinetic data of protein-protein, protein-nucleic acid, protein-ligand, nucleic acid-ligand binding or reaction events described in the literature. To accommodate increasing demand for studying and simulating biological systems, numerous improvements and updates have been made to KDBI, including new ways to access data by pathway and molecule names, data file in System Biology Markup Language format, more efficient search engine, access to published parameter sets of simulation models of 63 pathways, and 2.3-fold increase of data (19,263 entries of 10,532 distinctive biomolecular binding and 11,954 interaction events, involving 2635 proteins/protein complexes, 847 nucleic acids, 1603 small molecules and 45 multi-step processes). KDBI is publically available at http://bidd.nus.edu.sg/group/kdbi/kdbi.asp.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.