Evidence map›Paper›PMID 18957442›Full record

ArticleNucleic acids research2009

PlasmoDB: a functional genomic database for malaria parasites.

Cristina Aurrecoechea, John Brestelli, Brian P Brunk, Jennifer Dommer, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Greg Grant, Omar S Harb and 15 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 732 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
732citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

732 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Phosphorylation in theJournal of proteome research · 2024
    Pooled it
  2. A Dual, Systematic Approach to Malaria Diagnostic Biomarker Discovery.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Pooled it
  3. Trial
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  5. Review
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  13. Antimicrobial agents and chemotherapy · 2026
    Article
  14. Article
  15. mSphere · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

672 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Cristina AurrecoecheaCenter for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA.
John Brestelli
Brian P Brunk
Jennifer Dommer
Steve Fischer
Bindu Gajria
Xin Gao
Alan Gingle
Greg Grant
Omar S Harb
Mark Heiges
Frank Innamorato
John Iodice
Jessica C Kissinger
Eileen Kraemer
Wei Li
John A Miller
Vishal Nayak
Cary Pennington
Deborah F Pinney
David S Roos
Chris Ross
Christian J Stoeckert
Charles Treatman
Haiming Wang

Funding

PHS HHS HHSN266200400037C
6 · The paper itself

Abstract

PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB belongs to a family of genomic resources that are housed under the EuPathDB (http://EuPathDB.org) Bioinformatics Resource Center (BRC) umbrella. The latest release, PlasmoDB 5.5, contains numerous new data types from several broad categories--annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution. Data in PlasmoDB can be queried by selecting the data of interest from a query grid or drop down menus. Various results can then be combined with each other on the query history page. Search results can be downloaded with associated functional data and registered users can store their query history for future retrieval or analysis.

Indexed as

Databases, GeneticGenome, ProtozoanAnimalsGenomicsPlasmodiumProtozoan ProteinsTranscription, GeneticProtozoan Proteins

Identifiers

PMID18957442
PMCPMC2686598

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.