Evidence map›Paper›PMID 18955482›Full record

ArticleThe Journal of biological chemistry2008

Structure of the yeast vacuolar ATPase.

Zhenyu Zhang, Yesha Zheng, Hortense Mazon, Elena Milgrom, Norton Kitagawa, Erik Kish-Trier, Albert J R Heck, Patricia M Kane, Stephan Wilkens

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Eukaryotic yeast VFrontiers in molecular biosciences · 2024
    Article
  5. Tender love and disassembly: How a TLDc domain protein breaks the V-ATPase.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  6. Article
  7. The Plant V-ATPase.Frontiers in plant science · 2022
    Review
  8. Article
  9. Regulation and function of V-ATPases in physiology and disease.Biochimica et biophysica acta. Biomembranes · 2020
    Review
  10. Review
  11. Functional reconstitution of vacuolar HThe Journal of biological chemistry · 2019
    Article
  12. Article
  13. Article
  14. Breaking up and making up: The secret life of the vacuolar HProtein science : a publication of the Protein Society · 2017
    Review
  15. Biolayer interferometry of lipid nanodisc-reconstituted yeast vacuolar HProtein science : a publication of the Protein Society · 2017
    Article
  16. Article
  17. Article
  18. The Function of V-ATPases in Cancer.Physiological reviews · 2016
    Review
  19. Review
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Zhenyu ZhangDepartment of Biochemistry, University of California, Riverside, California 92521, USA.
Yesha Zheng
Hortense Mazon
Elena Milgrom
Norton Kitagawa
Erik Kish-Trier
Albert J R Heck
Patricia M Kane
Stephan Wilkens
University of California, Riverside · USSUNY Upstate Medical University · USUtrecht University · NL

Funding

STRUCTURE OF THE VACUOLAR ATPASE BY ELECTRON MICROSCOPYR01GM058600 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI WILKENS, STEPHAN · 1999 to 2020
$4.8M
SUBUNIT STRUCTURE/FUNCTION IN VACUOLAR H+ ATPASESR01GM050322 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI KANE, PATRICIA M · 1994 to 2015
$4.1M
STRUCTURE OF P-GLYCOPROTEIN BY ELECTRON MICROSCOPYR01CA100246 · NCI · UPSTATE MEDICAL UNIVERSITY · PI WILKENS, STEPHAN · 2004 to 2008
$843k
NCI NIH HHS CA100246NIGMS NIH HHS GM50322NIGMS NIH HHS GM58600NIGMS NIH HHS R01 GM050322
6 · The paper itself

Abstract

The subunit architecture of the yeast vacuolar ATPase (V-ATPase) was analyzed by single particle transmission electron microscopy and electrospray ionization (ESI) tandem mass spectrometry. A three-dimensional model of the intact V-ATPase was calculated from two-dimensional projections of the complex at a resolution of 25 angstroms. Images of yeast V-ATPase decorated with monoclonal antibodies against subunits A, E, and G position subunit A within the pseudo-hexagonal arrangement in the V1, the N terminus of subunit G in the V1-V0 interface, and the C terminus of subunit E at the top of the V1 domain. ESI tandem mass spectrometry of yeast V1-ATPase showed that subunits E and G are most easily lost in collision-induced dissociation, consistent with a peripheral location of the subunits. An atomic model of the yeast V-ATPase was generated by fitting of the available x-ray crystal structures into the electron microscopy-derived electron density map. The resulting atomic model of the yeast vacuolar ATPase serves as a framework to help understand the role the peripheral stalk subunits are playing in the regulation of the ATP hydrolysis driven proton pumping activity of the vacuolar ATPase.

Indexed as

Models, MolecularAdenosine TriphosphateHydrolysisProtein Structure, QuaternaryProtein SubunitsProtonsSaccharomyces cerevisiaeVacuolar Proton-Translocating ATPasesAdenosine TriphosphateProtein SubunitsProtonsVacuolar Proton-Translocating ATPases

Identifiers

PMID18955482
PMCPMC2602884
OpenAlexW2002801564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.