ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Comparative mapping of DNA sequences in rye (Secale cereale L.) in relation to the rice genome.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- A Genome-Wide Association Study Pinpoints Quantitative Trait Genes for Plant Height, Heading Date, Grain Quality, and Yield in Rye (Frontiers in plant science · 2021Article
- How Machine Learning Methods Helped Find Putative Rye Wax Genes Among GBS Data.International journal of molecular sciences · 2020Article
- Gene Expression Profiling and Fine Mapping Identifies a Gibberellin 2-Oxidase Gene Co-segregating With the Dominant Dwarfing GeneFrontiers in plant science · 2019Article
- Exploring new alleles for frost tolerance in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Fine mapping of the restorer gene Rfp3 from an Iranian primitive rye (Secale cereale L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- DArT Markers Effectively Target Gene Space in the Rye Genome.Frontiers in plant science · 2016Article
- CNMS: The preferred genic markers for comparative genomic, molecular phylogenetic, functional genetic diversity and differential gene regulatory expression analyses in chickpea.Journal of biosciences · 2015Article
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- Homoeologous relationship of rye chromosome arms as detected with wheat PLUG markers.Chromosoma · 2013Article
- Reticulate evolution of the rye genome.The Plant cell · 2013Article
- The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics.Plant physiology · 2013Article
- Genetic architecture of complex agronomic traits examined in two testcross populations of rye (Secale cereale L.).BMC genomics · 2012Article
- Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1.PloS one · 2012Article
- From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).BMC plant biology · 2011Article
- High-Resolution Genotyping of Wild Barley Introgression Lines and Fine-Mapping of the Threshability Locus thresh-1 Using the Illumina GoldenGate Assay.G3 (Bethesda, Md.) · 2011Article
- A doubled haploid rye linkage map with a QTL affecting α-amylase activity.Journal of applied genetics · 2011Article
- Dissection of QTL effects for root traits using a chromosome arm-specific mapping population in bread wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
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5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The rice genome has proven a valuable resource for comparative approaches to address individual genomic regions in Triticeae species at the molecular level. To exploit this resource for rye genetics and breeding, an inventory was made of EST-derived markers with known genomic positions in rye, which were related with those in rice. As a first inventory set, 92 EST-SSR markers were mapped which had been drawn from a non-redundant rye EST collection representing 5,423 unigenes and 2.2 Mb of DNA. Using a BC1 mapping population which involved an exotic rye accession as donor parent, these EST-SSR markers were arranged in a linkage map together with 25 genomic SSR markers as well as 131 AFLP and four STS markers. This map comprises seven linkage groups corresponding to the seven rye chromosomes and covers 724 cM of the rye genome. For comparative studies, additional inventory sets of EST-based markers were included which originated from the rye-mapping data published by other authors. Altogether, 502 EST-based markers with known chromosomal localizations in rye were used for BlastN search and 334 of them could be in silico mapped in the rice genome. Additionally, 14 markers were included which lacked sequence information but had been genetically mapped in rice. Based on the 348 markers, each of the seven rye chromosomes could be aligned with distinct portions of the rice genome, providing improved insight into the status of the rye-rice genome relationships. Furthermore, the aligned markers provide genomic anchor points between rye and rice, enabling the identification of conserved ortholog set markers for rye. Perspectives of rice as a model for genome analysis in rye are discussed.
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