Evidence map›Paper›PMID 18953401›Full record

ArticlePloS one2008

Telomeric expression sites are highly conserved in Trypanosoma brucei.

Christiane Hertz-Fowler, Luisa M Figueiredo, Michael A Quail, Marion Becker, Andrew Jackson, Nathalie Bason, Karen Brooks, Carol Churcher, Samah Fahkro, Ian Goodhead and 18 more

Abstract read
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 198 papers.

0numbers the graph read from it
0cells of the map it votes in
198citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

198 citing papers in PubMed.

  1. Article
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  3. Microbiology spectrum · 2026
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  10. A factor integrating transcription and repression of surface antigen genes in African trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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138 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Christiane Hertz-FowlerWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom. chf@sanger.ac.uk
Luisa M Figueiredo
Michael A Quail
Marion Becker
Andrew Jackson
Nathalie Bason
Karen Brooks
Carol Churcher
Samah Fahkro
Ian Goodhead
Paul Heath
Magdalena Kartvelishvili
Karen Mungall
David Harris
Heidi Hauser
Mandy Sanders
David Saunders
Kathy Seeger
Sarah Sharp
Jesse E Taylor
Danielle Walker
Brian White
Rosanna Young
George A M Cross
Gloria Rudenko
J David Barry
Edward J Louis
Matthew Berriman

Funding

MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR01AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1985 to 2011
$5.3M
NIAID NIH HHS R01 AI021729NIAID NIH HHS R01AI021729Wellcome Trust 095161
6 · The paper itself

Abstract

Subtelomeric regions are often under-represented in genome sequences of eukaryotes. One of the best known examples of the use of telomere proximity for adaptive purposes are the bloodstream expression sites (BESs) of the African trypanosome Trypanosoma brucei. To enhance our understanding of BES structure and function in host adaptation and immune evasion, the BES repertoire from the Lister 427 strain of T. brucei were independently tagged and sequenced. BESs are polymorphic in size and structure but reveal a surprisingly conserved architecture in the context of extensive recombination. Very small BESs do exist and many functioning BESs do not contain the full complement of expression site associated genes (ESAGs). The consequences of duplicated or missing ESAGs, including ESAG9, a newly named ESAG12, and additional variant surface glycoprotein genes (VSGs) were evaluated by functional assays after BESs were tagged with a drug-resistance gene. Phylogenetic analysis of constituent ESAG families suggests that BESs are sequence mosaics and that extensive recombination has shaped the evolution of the BES repertoire. This work opens important perspectives in understanding the molecular mechanisms of antigenic variation, a widely used strategy for immune evasion in pathogens, and telomere biology.

Indexed as

Conserved SequenceAnimalsAntigenic VariationCell LineChromosome MappingCloning, MolecularGene Expression RegulationGene SilencingHost-Parasite InteractionsPhylogenySequence Analysis, DNASequence Tagged SitesTelomereTranscription Initiation SiteTrypanosoma brucei brucei

Identifiers

PMID18953401
PMCPMC2567434

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.