ArticleNucleic acids research2009
Rfam: updates to the RNA families database.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 557 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
557 citing papers in PubMed, 1 synthesis or guideline pooled it.
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- Sphingobium yanoikuyae 41R9 Enhances Nitrogen Uptake by Modulating Transporter Genes and Root Development in Rapeseed.Plant, cell & environment · 2026Article
- Nearest Neighbor Parameters for Estimating RNA Folding Stability withbioRxiv : the preprint server for biology · 2026Article
- Genome Assembly and Genomic Characterization ofJournal of fungi (Basel, Switzerland) · 2026Article
- Genome analysis of Acrophialophora yunnanensis and its lignocellulolytic enzyme system.World journal of microbiology & biotechnology · 2026Article
- The Bacillus rugosus BPH-S36 genome, a symbiont enabling brown planthopper (Nilaparvata lugens) adaptation to resistant rice.Scientific data · 2026Article
- Screening and Characterization ofFoods (Basel, Switzerland) · 2026Article
- Whole-genome analysis reveals the growth-promoting and biocontrol potential of Bacillus amyloliquefaciens Ba. YN.J3 isolated from Avena Sativa.BMC genomics · 2026Article
- Isolation, identification and genomic analysis of Mycobacterium caprae strain SY-1 from Chinese sika deer (Cervus nippon).BMC genomics · 2026Article
- First genome report ofFrontiers in fungal biology · 2026Article
- Genomic and antimicrobial susceptibility characterization of a clinicalFrontiers in cellular and infection microbiology · 2026Article
- Genomic insights into Bordetella pertussis evolution and macrolide resistance in Yiwu, China.BMC genomics · 2025Article
- Whole-genome sequence of Xanthomonas arboricola pv. pruni strain 9-4 causing peach bacterial spot in China.BMC genomic data · 2025Article
- Pseudomonas algeriensis sp. nov.: A Promising Phosphate-Solubilizing Endophytic Bacterium Isolated from Legume Root Nodules in the Coastal Dunes of Northwest Algeria.Current microbiology · 2025Article
- Genomic Analysis ofJournal of fungi (Basel, Switzerland) · 2025Article
- Micro-RNA expression data from common carp brain cells infected by Cyvirus cyprinidallo3 at permissive and non-permissive temperatures.Data in brief · 2025Article
- A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value.Scientific data · 2025Article
- Characterization, whole-genome sequence analysis, and protease production of a new thermophilic Bacillus licheniformis strain isolated from Debagh hot spring, Algeria.International microbiology : the official journal of the Spanish Society for Microbiology · 2025Article
497 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
Abstract
Rfam is a collection of RNA sequence families, represented by multiple sequence alignments and covariance models (CMs). The primary aim of Rfam is to annotate new members of known RNA families on nucleotide sequences, particularly complete genomes, using sensitive BLAST filters in combination with CMs. A minority of families with a very broad taxonomic range (e.g. tRNA and rRNA) provide the majority of the sequence annotations, whilst the majority of Rfam families (e.g. snoRNAs and miRNAs) have a limited taxonomic range and provide a limited number of annotations. Recent improvements to the website, methodologies and data used by Rfam are discussed. Rfam is freely available on the Web at http://rfam.sanger.ac.uk/and http://rfam.janelia.org/.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.