ArticleNucleic acids research2009
GOBASE: an organelle genome database.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
28 citing papers in PubMed.
- Ov-RPA-CRISPR/Cas12a assay for the detection of Opisthorchis viverrini infection in field-collected human feces.Parasites & vectors · 2024Article
- Bcs1, a novel target for fungicide.Frontiers in chemistry · 2023Review
- OGDA: a comprehensive organelle genome database for algae.Database : the journal of biological databases and curation · 2020Article
- CpGDB : A Comprehensive Database of Chloroplast Genomes.Bioinformation · 2020Article
- REDIdb 3.0: A Comprehensive Collection of RNA Editing Events in Plant Organellar Genomes.Frontiers in plant science · 2018Article
- Complete mitochondrial genome sequence ofMitochondrial DNA. Part B, Resources · 2017Article
- Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies.PloS one · 2016Article
- The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?Briefings in functional genomics · 2016Review
- The intraspecific variability of mitochondrial genes of Agaricus bisporus reveals an extensive group I intron mobility combined with low nucleotide substitution rates.Current genetics · 2015Article
- Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs.Nucleic acids research · 2015Article
- ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection.Database : the journal of biological databases and curation · 2015Article
- Article
- Analyses of the complete genome and gene expression of chloroplast of sweet potato [Ipomoea batata].PloS one · 2015Article
- MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes.BMC evolutionary biology · 2014Article
- Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.Journal of plant research · 2014Article
- Article
- MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline.Molecular biology and evolution · 2013Article
- ChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013Article
- RNA editing and drug discovery for cancer therapy.TheScientificWorldJournal · 2013Review
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The organelle genome database GOBASE, now in its 21st release (June 2008), contains all published mitochondrion-encoded sequences (approximately 913,000) and chloroplast-encoded sequences (approximately 250,000) from a wide range of eukaryotic taxa. For all sequences, information on related genes, exons, introns, gene products and taxonomy is available, as well as selected genome maps and RNA secondary structures. Recent major enhancements to database functionality include: (i) addition of an interface for RNA editing data, with substitutions, insertions and deletions displayed using multiple alignments; (ii) addition of medically relevant information, such as haplotypes, SNPs and associated disease states, to human mitochondrial sequence data; (iii) addition of fully reannotated genome sequences for Escherichia coli and Nostoc sp., for reference and comparison; and (iv) a number of interface enhancements, such as the availability of both genomic and gene-coding sequence downloads, and a more sophisticated literature reference search functionality with links to PubMed where available. Future projects include the transfer of GOBASE features to NCBI/GenBank, allowing long-term preservation of accumulated expert information. The GOBASE database can be found at http://gobase.bcm.umontreal.ca/. Queries about custom and large-scale data retrievals should be addressed to gobase@bch.umontreal.ca.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.