Evidence map›Paper›PMID 18952862›Full record

ArticlePlant physiology2008

The DEG15 serine protease cleaves peroxisomal targeting signal 2-containing proteins in Arabidopsis.

Holger Schuhmann, Pitter F Huesgen, Christine Gietl, Iwona Adamska

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 78 citations in OpenAlex.

  1. Building peroxisomes: perspectives on plant peroxins.Biochemical Society transactions · 2026
    Review
  2. Article
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  6. Visualizing the dynamics of plant energy organelles.Biochemical Society transactions · 2023
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. APlant direct · 2019
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. E3 ubiquitin ligase SP1 regulates peroxisome biogenesis in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Holger SchuhmannDepartment of Physiology and Plant Biochemistry, University of Konstanz, DE-78457 Konstanz, Germany.
Pitter F Huesgen
Christine Gietl
Iwona Adamska
Technical University of Munich · DEUniversity of Konstanz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two distinct peroxisomal targeting signals (PTSs), the C-terminal PTS1 and the N-terminal PTS2, are defined. Processing of the PTS2 on protein import is conserved in higher eukaryotes. Recently, candidates for the responsible processing protease were identified from plants (DEG15) and mammals (TYSND1). We demonstrate that plants lacking DEG15 show an expressed phenotype potentially linked to reduced beta-oxidation, indicating the impact of protein processing on peroxisomal functions in higher eukaryotes. Mutational analysis of Arabidopsis (Arabidopsis thaliana) DEG15 revealed that conserved histidine, aspartic acid, and serine residues are essential for the proteolytic activity of this enzyme in vitro. This indicates that DEG15 and related enzymes are trypsin-like serine endopeptidases. Deletion of a plant-specific stretch present in the protease domain diminished, but did not abolish, the proteolytic activity of DEG15 against the PTS2-containing glyoxysomal malate dehydrogenase. Fluorescence microscopy showed that a DEG15-green fluorescent protein fusion construct is targeted to peroxisomes in planta. In vivo studies with isolated homozygous deg15 knockout mutants and complemented mutant lines suggest that this enzyme mediates general processing of PTS2-containing proteins.

Indexed as

Protein Sorting Signals2,4-Dichlorophenoxyacetic AcidAmino Acid SequenceArabidopsisArabidopsis ProteinsGreen Fluorescent ProteinsMolecular Sequence DataMutagenesis, Site-DirectedPeroxisomesProtein Structure, TertiaryRecombinant Fusion ProteinsSequence AlignmentSerine EndopeptidasesSubstrate Specificity2,4-Dichlorophenoxyacetic Acid4-(2,4-dichlorophenoxy)butyric acidArabidopsis ProteinsDeg15 protein, ArabidopsisGreen Fluorescent ProteinsProtein Sorting SignalsRecombinant Fusion ProteinsSerine Endopeptidases

Identifiers

PMID18952862
PMCPMC2593680
OpenAlexW1969624770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.