Evidence map›Paper›PMID 18952852›Full record

ArticleGenome research2009

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.

M Katharine Rudd, Raelynn M Endicott, Cynthia Friedman, Megan Walker, Janet M Young, Kazutoyo Osoegawa, NISC Comparative Sequencing Program, Pieter J de Jong, Eric D Green, Barbara J Trask

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Reconstruction and evolutionary history of eutherian chromosomes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  4. Multiple Mechanisms Contribute To Telomere Maintenance.Journal of cancer biology & research · 2013
    Article
  5. Article
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  7. Article
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  10. Article
  11. Article
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  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

M Katharine RuddDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA.
Raelynn M Endicott
Cynthia Friedman
Megan Walker
Janet M Young
Kazutoyo Osoegawa
NISC Comparative Sequencing Program
Pieter J de Jong
Eric D Green
Barbara J Trask
Fred Hutch Cancer Center · USNational Institutes of Health · USChildren’s Institute · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
BAC Library Production for Comparative GeneticsU01HG002523 · NHGRI · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI DE JONG, PIETER J. · 2002 to 2008
$7.7M
Structural, functional genomics olfactory receptor genesR01DC004209 · NIDCD · UNIVERSITY OF WASHINGTON · PI TRASK, BARBARA J. · 1999 to 2008
$5.9M
Variation, functions, and dynamics of human subtelomeresR01GM057070 · NIGMS · UNIVERSITY OF WASHINGTON · PI TAPSCOTT, STEPHEN J · 1997 to 2010
$4.4M
Structural and Functional Analysis of Mammalian ChromosomesZIAHG000060 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GREEN, ERIC · 2009 to 2010
$4.3M
NHGRI NIH HHS T32 HG000035NHGRI NIH HHS T32-HG00035NHGRI NIH HHS U01 HG002523NIDCD NIH HHS R01 DC004209NIDCD NIH HHS R01-DC004209NIGMS NIH HHS R01 GM057070NIGMS NIH HHS R01-GM057070
6 · The paper itself

Abstract

Subtelomeres are concentrations of interchromosomal segmental duplications capped by telomeric repeats at the ends of chromosomes. The nature of the segments shared by different sets of human subtelomeres reflects their high rate of recent interchromosomal exchange. Here, we characterize the rearrangements incurred by the 15q subtelomere after it arose from a chromosome fission event in the common ancestor of great apes. We used FISH, sequencing of genomic clones, and PCR to map the breakpoint of this fission and track the fate of flanking sequence in human, chimpanzee, gorilla, orangutan, and macaque genomes. The ancestral locus, a cluster of olfactory receptor (OR) genes, lies internally on macaque chromosome 7. Sequence originating from this fission site is split between the terminus of 15q and the pericentromere of 14q in the great apes. Numerous structural rearrangements, including interstitial deletions and transfers of material to or from other subtelomeres, occurred subsequent to the fission, such that each species has a unique 15q structure and unique collection of ORs derived from the fission locus. The most striking rearrangement involved transfer of at least 200 kb from the fission-site region to the end of chromosome 4q, where much still resides in chimpanzee and gorilla, but not in human. This gross structural difference places the subtelomeric defect underlying facioscapulohumeral muscular dystrophy (FSHD) much closer to the telomere in human 4q than in the hybrid 4q-15q subtelomere of chimpanzee.

Indexed as

AnimalsChromosomesChromosomes, Artificial, BacterialChromosomes, HumanChromosomes, Human, Pair 4Gorilla gorillaHumansIn Situ Hybridization, FluorescenceMacaca mulattaMolecular Sequence DataMultigene FamilyPan troglodytesPolymerase Chain ReactionPongo pygmaeusPrimatesReceptors, OdorantReceptors, Odorant

Identifiers

PMID18952852
PMCPMC2612970
OpenAlexW2123181395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.