Evidence map›Paper›PMID 18950675›Full record

ArticleBiochimie2009

DNA-binding properties of the yeast Rgt1 repressor.

Jeong-Ho Kim

Open access · greenAbstract read
In one paragraph

Article in Biochimie, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Enhanced production of 2,3-butanediol by engineeredBiotechnology for biofuels · 2016
    Article
  6. Article
  7. Article
  8. Review
  9. Carbon source dependent promoters in yeasts.Microbial cell factories · 2014
    Review
  10. Article
  11. The glucose signaling network in yeast.Biochimica et biophysica acta · 2013
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Jeong-Ho KimMississippi Functional Genomics Network, Department of Biological Sciences, The University of Southern Mississippi, Hattiesburg, 39406, USA. jeongho.kim@mfgn.usm.edu
University of Southern Mississippi · US

Funding

TOUGALOO PROTEOMICSP20RR016476 · NCRR · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI SHEARER, GLEN · 2001 to 2011
$30.4M
NCRR NIH HHS P20 RR016476NCRR NIH HHS RR016476-06
6 · The paper itself

Abstract

The yeast HXT (glucose transporter gene) repressor Rgt1 lacks a dimerization domain and thus appears to bind as a monomer to its consensus binding site sequence (5'-CGGANNA-3'). The HXT1 promoter contains 8 Rgt1-binding sites, but its expression is not effectively repressed by Rgt1. In the present study, the Rgt1-binding sites in the HXT1 promoter were analyzed to examine how Rgt1 mediates transcriptional repression. It is seen that Rgt1 binds the HXT1 promoter, but does not significantly mediate repression. When engineered to be multimerized without the intervening sequences between the Rgt1-binding sites, however, 4 or more Rgt1-binding sites were required to provide sufficient Rgt1-dependent repression. These findings suggest that the intervening sequences between the Rgt1-binding sites are important for the regulation of Rgt1 function and that Rgt1 functions efficiently only through multiple binding sites.

Indexed as

Binding SitesChromatin ImmunoprecipitationDNA-Binding ProteinsDNA, FungalFungal ProteinsGene Expression Regulation, FungalPromoter Regions, GeneticProtein MultimerizationRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription FactorsDNA-Binding ProteinsDNA, FungalFungal ProteinsRepressor ProteinsRGT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID18950675
PMCPMC2859070
OpenAlexW2027106955

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.