Evidence map›Paper›PMID 18950478›Full record

ArticleBMC evolutionary biology2008

Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis.

Yves Deveaux, Claire Toffano-Nioche, Gaelle Claisse, Vincent Thareau, Halima Morin, Patrick Laufs, Hervé Moreau, Martin Kreis, Alain Lecharny

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed, 1 pooled it
10.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 1 synthesis or guideline pooled it, 194 citations in OpenAlex.

  1. Pooled it
  2. ZmTB1Plants (Basel, Switzerland) · 2026
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  3. Genome-Wide Identification and Expression Analysis of theCurrent issues in molecular biology · 2026
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Genome-wide identification and characterization ofFrontiers in plant science · 2026
    Article
  9. Review
  10. The down-regulation of MsWOX13-2 promotes enhanced waterlogging resilience in alfalfa.The Plant journal : for cell and molecular biology · 2025
    Article
  11. Article
  12. Article
  13. Genome-Wide Identification ofPlants (Basel, Switzerland) · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Yves DeveauxUniversité Paris-Sud 11, Institut de Biotechnologie des Plantes, Bâtiment 630, UMR/CNRS 8618, F-91405 Orsay, France. yves.deveaux@u-psud.fr
Claire Toffano-Nioche
Gaelle Claisse
Vincent Thareau
Halima Morin
Patrick Laufs
Hervé Moreau
Martin Kreis
Alain Lecharny
Université Paris-Sud · FRCentre National de la Recherche Scientifique · FRInstitut des Sciences des Plantes de Paris Saclay · FRInstitut Jean-Pierre Bourgin · FRInstitut National de la Recherche Agronomique · MALaboratoire d'Informatique pour la Mécanique et les Sciences de l'Ingénieur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Wuschel related homeobox (WOX) family proteins are key regulators implicated in the determination of cell fate in plants by preventing cell differentiation. A recent WOX phylogeny, based on WOX homeodomains, showed that all of the Physcomitrella patens and Selaginella moellendorffii WOX proteins clustered into a single orthologous group. We hypothesized that members of this group might preferentially share a significant part of their function in phylogenetically distant organisms. Hence, we first validated the limits of the WOX13 orthologous group (WOX13 OG) using the occurrence of other clade specific signatures and conserved intron insertion sites. Secondly, a functional analysis using expression data and mutants was undertaken.

resultsThe WOX13 OG contained the most conserved plant WOX proteins including the only WOX detected in the highly proliferating basal unicellular and photosynthetic organism Ostreococcus tauri. A large expansion of the WOX family was observed after the separation of mosses from other land plants and before monocots and dicots have arisen. In Arabidopsis thaliana, AtWOX13 was dynamically expressed during primary and lateral root initiation and development, in gynoecium and during embryo development. AtWOX13 appeared to affect the floral transition. An intriguing clade, represented by the functional AtWOX14 gene inside the WOX13 OG, was only found in the Brassicaceae. Compared to AtWOX13, the gene expression profile of AtWOX14 was restricted to the early stages of lateral root formation and specific to developing anthers. A mutational insertion upstream of the AtWOX14 homeodomain sequence led to abnormal root development, a delay in the floral transition and premature anther differentiation.

conclusionOur data provide evidence in favor of the WOX13 OG as the clade containing the most conserved WOX genes and established a functional link to organ initiation and development in Arabidopsis, most likely by preventing premature differentiation. The future use of Ostreococcus tauri and Physcomitrella patens as biological models should allow us to obtain a better insight into the functional importance of WOX13 OG genes.

Indexed as

Conserved SequenceAmino Acid MotifsAmino Acid SequenceArabidopsisArabidopsis ProteinsEukaryotaFlowersGene Expression ProfilingGene Expression Regulation, PlantGene Knockout TechniquesGene OrderGenome, PlantHomeodomain ProteinsMolecular Sequence DataMutationPhylogenyArabidopsis ProteinsHomeodomain ProteinsWUSCHEL protein, Arabidopsis

Identifiers

PMID18950478
PMCPMC2584047
OpenAlexW1990766916

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.