Evidence map›Paper›PMID 18948549›Full record

ArticleJournal of leukocyte biology2009

Mechanisms of SHP-1 P2 promoter regulation in hematopoietic cells and its silencing in HTLV-1-transformed T cells.

Koichi Nakase, Jihua Cheng, Quan Zhu, Wayne A Marasco

Open access · bronzeAbstract read
In one paragraph

Article in Journal of leukocyte biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

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  15. Macrophages of multiple sclerosis patients display deficient SHP-1 expression and enhanced inflammatory phenotype.Laboratory investigation; a journal of technical methods and pathology · 2009
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Koichi NakaseDepartment of Cancer Immunology and AIDS, Dana-Farber Cancer Institute, Harvard Medical School, 44 Binney St., Boston, MA 02115, USA.
Jihua Cheng
Quan Zhu
Wayne A Marasco
Dana-Farber Cancer Institute · USHarvard University · US

Funding

Role of SHP-1 Deregulation in HTLV-1 LeukemogenesisR01CA104936 · NCI · DANA-FARBER CANCER INSTITUTE · PI MARASCO, WAYNE A. · 2004 to 2008
$1.3M
An AIDS Vaccine Strategy uding hCCR5-lgG Fusion ProteinsR21AI058804 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ZHU, QUAN KAREN · 2004 to 2005
$497k
NCI NIH HHS CA104936NCI NIH HHS R01 CA104936NIAID NIH HHS AI058804NIAID NIH HHS R21 AI058804
6 · The paper itself

Abstract

The Src homology-2-containing protein-tyrosine phosphatase 1 (SHP-1), is a negative regulator of cell signaling. It is also considered a tumor suppressor gene because of its ability to antagonize the action of tyrosine kinases. Although SHP-1 is expressed strongly in hematopoietic cells, decreased expression has been observed in various hematological malignancies, which suggests a central involvement of SHP-1 in leukemogenesis. We have shown previously that human T cell lymphotropic virus type-1 (HTLV-1) Tax-induced promoter silencing (TIPS) is an early event causing down-regulation of SHP-1 expression, which is dependent on NF-kappaB. In this study, DNase I footprinting and EMSA also revealed binding of transcription factors, specificity protein 1 (Sp1) and octamer-binding transcription factor 1 (Oct-1) to the P2 promoter, and site-directed mutagenesis confirmed that these factors contribute to the basal P2 promoter activity. Chromatin immunoprecipitation (CHIP) assays showed that Sp1, Oct-1, NF-kappaB, CREB-1, and RNA polymerase II interacted with the core SHP-1 P2 promoter in CD4+ T cells and Jurkat cells but not in HTLV-1-transformed MT-2 and HUT102 cells when HTLV-1 Tax is present. Furthermore, bisulfite sequencing of the SHP-1 P2 core region revealed heavy CpG methylation in HTLV-1-transformed cells compared with freshly isolated CD4+ T cells and HTLV-1-noninfected T cell lines. A significant inverse correlation between degree of CpG methylation and expression of SHP-1 mRNA or protein was observed. Taken together, our data support the notion that in HTLV-1-transformed CD4+ T cells, TIPS causes dissociation of transcription factors from the core SHP-1 P2 promoter, which in turn leads to subsequent DNA methylation, an important early step for leukemogenesis.

Indexed as

Cell Transformation, ViralPromoter Regions, GeneticBase SequenceCD4-Positive T-LymphocytesCells, CulturedCpG IslandsCyclic AMP Response Element-Binding ProteinDNA MethylationGene Expression RegulationGene SilencingHematopoiesisHumansHuman T-lymphotropic virus 1Molecular Sequence DataNF-kappa BOctamer Transcription Factor-1CREB1 protein, humanCyclic AMP Response Element-Binding ProteinNF-kappa BOctamer Transcription Factor-1Protein Tyrosine Phosphatase, Non-Receptor Type 6PTPN6 protein, humanRNA Polymerase IISp1 Transcription Factor

Identifiers

PMID18948549
PMCPMC2626764
OpenAlexW2116169609

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.