Evidence map›Paper›PMID 18948357›Full record

ArticleJournal of medical genetics2009

Novel transglutaminase-1 mutations and genotype-phenotype investigations of 104 patients with autosomal recessive congenital ichthyosis in the USA.

S Farasat, M-H Wei, M Herman, D J Liewehr, S M Steinberg, S J Bale, P Fleckman, J R Toro

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Journal of medical genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00074685 (Research Registry for Inherited Disorders of Keratinization), which is not on this map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00074685 completednot on this map

Research Registry for Inherited Disorders of Keratinization

TypeobservationalSponsorNational Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)Ran1994 to 2004Enrolled610ConditionsDarier Disease, Hailey-Hailey Disease, Hyperkeratosis, Epidermolytic, Ichthyosis
3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 93 citations in OpenAlex.

  1. Article
  2. A standardized approach to test missenseJID innovations : skin science from molecules to population health · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. A cellular disease model toward gene therapy ofMolecular therapy. Methods & clinical development · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Identification andMedicina (Kaunas, Lithuania) · 2023
    Article
  11. Review
  12. Correction of the pathogenic mutation in TGM1 gene by adenine base editing in mutant embryos.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  13. Article
  14. Compound Heterozygous Mutations inPharmacogenomics and personalized medicine · 2022
    Article
  15. Review
  16. Protective Effect ofMolecules (Basel, Switzerland) · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

S FarasatDivision of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, 6120 Executive Boulevard, Rockville, MD 20892-4562, USA.
M-H Wei
M Herman
D J Liewehr
S M Steinberg
S J Bale
P Fleckman
J R Toro
National Cancer Institute · USScience Applications International Corporation (United States) · USUniversity of Washington · US

Funding

INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
Institute of Translational Health SciencesUL1TR000423 · NCATS · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2012 to 2016
$49.4M
Institute of Translational Health SciencesTL1TR000422 · NCATS · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2012 to 2016
$2.1M
REGISTRY FOR INHERITED DISORDERS OF KERATINIZATIONN01AR042216 · NIAMS · UNIVERSITY OF WASHINGTON · PI FLECKMAN, PHILIP H · 1994 to 2000
$18k
Intramural NIH HHSNCATS NIH HHS TL1 TR000422NCATS NIH HHS UL1 TR000423NCRR NIH HHS RR 025014-01NCRR NIH HHS UL1 RR025014NIAMS NIH HHS N01 AR042216
6 · The paper itself

Abstract

backgroundAutosomal recessive congenital ichthyosis (ARCI) is a rare hereditary disorder of cornification. Mutations in the transglutaminase-1 (TGM1) gene, which encodes for the epidermal enzyme transglutaminase-1 (TGase-1), are one of the causes of ARCI.

methodsThe TGM1 mutation spectrum was characterised and genotype-phenotype correlations investigated in 104 patients with ARCI ascertained through the National Registry for Ichthyosis and Related Disorders in the USA. Methods: Germline mutations in TGM1 were identified in 55% (57/104) of patients with ARCI. Arginine residues in TGase-1 were mutated in 39% (22/57) of patients overall and 54% (20/37) of those with missense mutations. In total, 55% (12/22) of missense mutations were within CpG dinucleotides and 92% (11/12) of these mutations were C-->T or G-->A transitions. The genotype-phenotype investigation found that ARCI with TGM1 mutations was significantly associated with presence of collodion membrane at birth (p = 0.006), ectropion (p = 0.001), plate-like scales (p = 0.005) and alopecia (p = 0.001). Patients who had at least one mutation predicted to truncate TGase-1 were more likely to have more severe hypohidrosis (p = 0.001) and overheating (p = 0.0007) at onset of symptoms than were those with exclusively TGM1 missense mutations. A logistic model was developed, which predicted that individuals with collodion membrane, alopecia and/or eye problems are about four times more likely to have TGM1 mutations than patients without these findings.

conclusionThis is the largest investigation of patients with ARCI to date. It expands the TGM1 mutation spectrum and confirms that despite genetic and phenotypic heterogeneity in ARCI, TGM1 is the main causative gene for this disorder. The high frequency of mutated arginine codons in TGM1 may be due to the deamination of CpG dinucleotides.

Indexed as

GenotypeMutationPhenotypeAmino Acid SequenceDNA Mutational AnalysisGenes, RecessiveHumansIchthyosiform Erythroderma, CongenitalMolecular Sequence DataSequence AlignmentTransglutaminasesUnited Statestransglutaminase 1Transglutaminases

Identifiers

PMID18948357
PMCPMC3044481
OpenAlexW2153433704

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.