ArticleNucleic acids research2009
MODBASE, a database of annotated comparative protein structure models and associated resources.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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Who cites it
79 citing papers in PubMed.
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- Discovery and Validation of Lmj_04_BRCT Domain, a Novel Therapeutic Target: Identification of Candidate Drugs for Leishmaniasis.International journal of molecular sciences · 2021Article
- Identification of promising molecules against MurD ligase from Acinetobacter baumannii: insights from comparative protein modelling, virtual screening, molecular dynamics simulations and MM/PBSA analysis.Journal of molecular modeling · 2020Article
- A resource of variant effect predictions of single nucleotide variants in model organisms.Molecular systems biology · 2018Article
- Anticipating innovations in structural biology.Quarterly reviews of biophysics · 2018Review
- Investigation of allosteric coupling in human β2-adrenergic receptor in the presence of intracellular loop 3.BMC structural biology · 2016Article
- Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure.Cancer research · 2016Article
- Carnitine palmitoyl transferase-1A (CPT1A): a new tumor specific target in human breast cancer.Oncotarget · 2016Article
- Homology modeling of larger proteins guided by chemical shifts.Nature methods · 2015Article
- Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB.Proteins · 2015Article
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- Antibodies to a single, conserved epitope in Anopheles APN1 inhibit universal transmission of Plasmodium falciparum and Plasmodium vivax malaria.Infection and immunity · 2014Article
- Computational methods in drug discovery.Pharmacological reviews · 2014Review
- Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules.BMC biophysics · 2014Article
- Article
- ModBase, a database of annotated comparative protein structure models and associated resources.Nucleic acids research · 2014Article
- Evolution of modular intraflagellar transport from a coatomer-like progenitor.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- The shape of protein crowders is a major determinant of protein diffusion.Biophysical journal · 2013Article
- PIBiophysical reviews · 2013Article
19 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors.
Funding
Abstract
MODBASE (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by MODPIPE, an automated modeling pipeline that relies primarily on MODELLER for fold assignment, sequence-structure alignment, model building and model assessment (http:/salilab.org/modeller). MODBASE currently contains 5,152,695 reliable models for domains in 1,593,209 unique protein sequences; only models based on statistically significant alignments and/or models assessed to have the correct fold are included. MODBASE also allows users to calculate comparative models on demand, through an interface to the MODWEB modeling server (http://salilab.org/modweb). Other resources integrated with MODBASE include databases of multiple protein structure alignments (DBAli), structurally defined ligand binding sites (LIGBASE), predicted ligand binding sites (AnnoLyze), structurally defined binary domain interfaces (PIBASE) and annotated single nucleotide polymorphisms and somatic mutations found in human proteins (LS-SNP, LS-Mut). MODBASE models are also available through the Protein Model Portal (http://www.proteinmodelportal.org/).
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Registered trials
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