Evidence map›Paper›PMID 18945676›Full record

ArticleThe Journal of biological chemistry2008

Role of intermonomer ionic bridges in the stabilization of the actin filament.

Ema Stokasimov, Melissa McKane, Peter A Rubenstein

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Site-specific cation release drives actin filament severing by vertebrate cofilin.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  3. Article
  4. Identification of cation-binding sites on actin that drive polymerization and modulate bending stiffness.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  5. Article
  6. Structural polymorphism in F-actin.Nature structural & molecular biology · 2010
    Article
  7. A nucleotide state-sensing region on actin.The Journal of biological chemistry · 2010
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ema StokasimovDepartment of Biochemistry, University of Iowa Carver College of Medicine, Iowa City, Iowa 52242, USA.
Melissa McKane
Peter A Rubenstein
University of Iowa · US

Funding

MUTAGENIC STUDY OF YEAST ACTIN CONFORMATIONAL CHANGESR01GM033689 · NIGMS · UNIVERSITY OF IOWA · PI RUBENSTEIN, PETER A. · 1985 to 2010
$3.7M
NIGMS NIH HHS GM33689NIGMS NIH HHS R01 GM033689
6 · The paper itself

Abstract

Filament formation is required for most of the functions of actin. However, the intermonomer interactions that stabilize F-actin have not been elucidated because of a lack of an F-actin crystal structure. The Holmes muscle actin model suggests that an ionic interaction between Arg-39 of one monomer and Glu-167 of an adjacent monomer in the same strand contributes to this stabilization. Yeast actin has an Ala-167 instead. F-actin molecular dynamics modeling predicts another interaction between Arg-39 of one monomer and Asp-275 of an opposing strand monomer. In Toxoplasma gondii actin, which forms short stubby filaments, the Asp-275 equivalent is replaced by Arg leading to a potential filament-destabilizing charge-charge repulsion. Using yeast actin, we tested the effect of A167E as a potential stabilizer and A167R and D275R as potential filament disruptors. All mutations caused abnormal growth and mitochondrial malfunction. A167E and D275R actins polymerize normally and form relatively normal appearing filaments. A167R nucleates filaments more slowly and forms filament bundles. The R39D/A167R double mutant, which re-establishes an ionic bond in the opposite orientation, reverses this polymerization and bundling defect. Stoichiometric amounts of yeast cofilin have little effect on wild-type and A167E filaments. However, D275R and A167R actin depolymerization is profound with cofilin. Although our results suggest that disruption of an interaction between Arg-39 and Asp-275 is not sufficient to cause fragmentation, it suggests that it changes filament stability thereby disposing it for enhanced cofilin depolymerizing effects. Ala-167 results demonstrate the in vivo and in vitro importance of another potential Arg-39 ionic interaction.

Indexed as

Actin CytoskeletonActin Depolymerizing FactorsActinsAlanineAnimalsArginineAspartic AcidDNA PrimersIonsKineticsModels, MolecularMolecular ConformationMutationProtein BindingToxoplasmaActin Depolymerizing FactorsActinsAlanineArginineAspartic AcidDNA PrimersIons

Identifiers

PMID18945676
PMCPMC2596410
OpenAlexW2000224269

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.