Evidence map›Paper›PMID 18941234›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2008

Hepatitis C virus immune escape via exploitation of a hole in the T cell repertoire.

Matthias Wölfl, Alleluiah Rutebemberwa, Timothy Mosbruger, Qing Mao, Hong-mei Li, Dale Netski, Stuart C Ray, Drew Pardoll, John Sidney, Alessandro Sette and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 72 citations in OpenAlex.

  1. Peripheral PD-1Frontiers in immunology · 2019
    Trial
  2. Review
  3. Review
  4. Review
  5. Current and emerging strategies for the prevention of hepatocellular carcinoma.Nature reviews. Gastroenterology & hepatology · 2025
    Review
  6. Review
  7. A journey to your self: The vague definition of immune self and its practical implications.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Frontiers in microbiology · 2024
    Article
  9. Hepatocellular Carcinoma Prevention in the Era of Hepatitis C Elimination.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Article
  12. Review
  13. Self-mediated positive selection of T cells sets an obstacle to the recognition of nonself.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Expansion of Unique Hepatitis C Virus-Specific Public CD8Journal of immunology (Baltimore, Md. : 1950) · 2021
    Article
  15. Review
  16. Review
  17. Proteasome-GeneratedFrontiers in immunology · 2021
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Matthias WölflFred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Alleluiah Rutebemberwa
Timothy Mosbruger
Qing Mao
Hong-mei Li
Dale Netski
Stuart C Ray
Drew Pardoll
John Sidney
Alessandro Sette
Todd Allen
Thomas Kuntzen
Daniel G Kavanagh
Jürgen Kuball
Philip D Greenberg
Andrea L Cox
Fred Hutch Cancer Center · USJohns Hopkins University · USMass General Brigham · USLa Jolla Institute for Immunology · USArmy Medical University · CN

Funding

VIRUS-MEDIATED MYELOSUPPRESSIONP01CA018029 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Geoffrey Roger HILL · 1985 to 2026
$128.4M
Virus-Host Interactions in Hepatitis C Virus (HCV) InfectionsU19AI040035 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI THOMAS, DAVID L · 1996 to 2009
$12.0M
Mechanisms of Murine Turmor Eradication by ImmunotherapyR01CA033084 · NCI · UNIVERSITY OF WASHINGTON · PI GREENBERG, PHILIP D · 1986 to 2017
$5.8M
MECHANISMS OF MURINE TUMOR ERADICATION BY IMMUNOTHERAPYR37CA033084 · NCI · UNIVERSITY OF WASHINGTON · PI GREENBERG, PHILIP D · 1991 to 2006
$3.5M
Mechanisms of Hepatitis C Virus EvolutionR01DA024565 · NIDA · JOHNS HOPKINS UNIVERSITY · PI RAY, STUART C · 2007 to 2011
$2.6M
HIV BEHAVIORS IN INJECTING AND NONINJECTING DRUG USERSR01DA011880 · NIDA · JOHNS HOPKINS UNIVERSITY · PI SHERMAN, SUSAN GAIL · 1998 to 2003
$1.3M
SEQUENCE SELECTION AND PERSISTENCE OF HEPATITIS CR01DK057998 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI RAY, STUART C · 1999 to 2003
$1.1M
The T cell response to rapidly evolving HIV antigensF32AI058457 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI KAVANAGH, DANIEL GARRETT · 2004 to 2006
$149k
NCI NIH HHS CA18029NCI NIH HHS CA33084NCI NIH HHS P01 CA018029NCI NIH HHS R01 CA033084NCI NIH HHS R37 CA033084NIAID NIH HHS F32 AI058457NIAID NIH HHS U19 AI040035NIDA NIH HHS K08 DA11880NIDA NIH HHS R01 DA024565NIDDK NIH HHS R01 DK057998NIDDK NIH HHS R01 DK57998
6 · The paper itself

Abstract

Hepatitis C virus (HCV) infection frequently persists despite eliciting substantial virus-specific immune responses. Thus, HCV infection provides a setting in which to investigate mechanisms of immune escape that allow for viral persistence. Viral amino acid substitutions resulting in decreased MHC binding or impaired Ag processing of T cell epitopes reduce Ag density on the cell surface, permitting evasion of T cell responses in chronic viral infection. Substitutions in viral epitopes that alter TCR contact residues frequently result in escape, but via unclear mechanisms because such substitutions do not reduce surface presentation of peptide-MHC complexes and would be expected to prime T cells with new specificities. We demonstrate that a known in vivo HCV mutation involving a TCR contact residue significantly diminishes T cell recognition and, in contrast to the original sequence, fails to effectively prime naive T cells. This mutant epitope thus escapes de novo immune recognition because there are few highly specific cognate TCR among the primary human T cell repertoire. This example is the first on viral immune escape via exploitation of a "hole" in the T cell repertoire, and may represent an important general mechanism of viral persistence.

Indexed as

Acute DiseaseAdolescentAdultAmino Acid SubstitutionAntigen PresentationCD8-Positive T-LymphocytesCell Line, TransformedCells, CulturedEpitopes, T-LymphocyteHepacivirusHepatitis CHumansMutationProspective StudiesReceptors, Antigen, T-CellViral ProteinsEpitopes, T-LymphocyteReceptors, Antigen, T-CellViral Proteins

Identifiers

PMID18941234
PMCPMC2742502
OpenAlexW2163152566

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.