ArticleNucleic acids research2009
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
23 citing papers in PubMed.
- A Multi-Omics Database for Parasitic Nematodes and Trematodes.Methods in molecular biology (Clifton, N.J.) · 2018Article
- Profiling the macrofilaricidal effects of flubendazole on adult female Brugia malayi using RNAseq.International journal for parasitology. Drugs and drug resistance · 2016Article
- The Effects of Ivermectin on Brugia malayi Females In Vitro: A Transcriptomic Approach.PLoS neglected tropical diseases · 2016Article
- The Effect of In Vitro Cultivation on the Transcriptome of Adult Brugia malayi.PLoS neglected tropical diseases · 2016Article
- A globin domain in a neuronal transmembrane receptor of Caenorhabditis elegans and Ascaris suum: molecular modeling and functional properties.The Journal of biological chemistry · 2015Article
- Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data.Nucleic acids research · 2012Article
- The map-1 gene family in root-knot nematodes, Meloidogyne spp.: a set of taxonomically restricted genes specific to clonal species.PloS one · 2012Article
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.BMC bioinformatics · 2011Article
- Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti--identification of stage-specific proteases.Molecular & cellular proteomics : MCP · 2011Article
- Stage-specific excretory-secretory small heat shock proteins from the parasitic nematode Strongyloides ratti--putative links to host's intestinal mucosal defense system.The FEBS journal · 2011Article
- Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects.BMC evolutionary biology · 2011Article
- RNAi effector diversity in nematodes.PLoS neglected tropical diseases · 2011Article
- Targeting protein-protein interactions for parasite control.PloS one · 2011Article
- The draft genome of the parasitic nematode Trichinella spiralis.Nature genetics · 2011Article
- Gender-associated genes in filarial nematodes are important for reproduction and potential intervention targets.PLoS neglected tropical diseases · 2011Article
- HelmCoP: an online resource for helminth functional genomics and drug and vaccine targets prioritization.PloS one · 2011Article
- Article
- Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.PLoS genetics · 2010Article
- Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation.BMC genomics · 2010Article
- Helminth genomics: The implications for human health.PLoS neglected tropical diseases · 2009Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
Nematode.net (http://nematode.net) is a publicly available resource dedicated to the study of parasitic nematodes. In 2000, the Genome Center at Washington University (GC) joined a consortium including the Nematode Genomics group in Edinburgh, and the Pathogen Sequencing Unit of the Sanger Institute to generate expressed sequence tags (ESTs) as an inexpensive and efficient solution for gene discovery in parasitic nematodes. As of 2008 the GC, sampling key parasites of humans, animals and plants, has generated over 500,000 ESTs and 1.2 million genome survey sequences from more than 30 non-Caenorhabditis elegans nematodes. Nematode.net was implemented to offer user-friendly access to data produced by this project. In addition to sequence data, the site hosts: assembled NemaGene clusters in GBrowse views characterizing composition and protein homology, functional Gene Ontology annotations presented via the AmiGO browser, KEGG-based graphical display of NemaGene clusters mapped to metabolic pathways, codon usage tables, NemFam protein families which represent conserved nematode-restricted coding sequences not found in public protein databases, a web-based WU-BLAST search tool that allows complex querying and other assorted resources. The primary aim of Nematode.net is the dissemination of this diverse collection of information to the broader scientific community in a way that is useful, consistent, centralized and enduring.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.