Evidence map›Paper›PMID 18940671›Full record

ArticleChemistry & biology2008

Conversion of red fluorescent protein into a bright blue probe.

Oksana M Subach, Illia S Gundorov, Masami Yoshimura, Fedor V Subach, Jinghang Zhang, David Grüenwald, Ekaterina A Souslova, Dmitriy M Chudakov, Vladislav V Verkhusha

Abstract read
In one paragraph

Article in Chemistry & biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 169 papers.

0numbers the graph read from it
0cells of the map it votes in
169citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

169 citing papers in PubMed.

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  17. Monoallelic de novoScience advances · 2024
    Article
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  20. Article

109 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Oksana M SubachDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Illia S Gundorov
Masami Yoshimura
Fedor V Subach
Jinghang Zhang
David Grüenwald
Ekaterina A Souslova
Dmitriy M Chudakov
Vladislav V Verkhusha

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Immunology/Pathology CoreP30AI051519 · NIAID · YESHIVA UNIVERSITY · PI GOLDSTEIN, HARRIS · 2003 to 2013
$18.6M
Action of Ethanol on Cyclic AMP Signal TransductionR01AA013148 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI YOSHIMURA, MASAMI · 2002 to 2013
$2.5M
Molecular Fluorescent ToolkitR01GM073913 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI VERKHUSHA, VLADISLAV · 2006 to 2014
$2.4M
Kindling Fluorescent Proteins for Tagging and BiosensorsR01GM070358 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI VERKHUSHA, VLADISLAV · 2004 to 2007
$974k
Real-time measurement of ethanol's effect on cyclic AMP metabolism in live cellsR21AA017303 · NIAAA · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI YOSHIMURA, MASAMI · 2008 to 2009
$361k
Action of Ethanol on Cyclic AMP Signal TransductionR56AA013148 · NIAAA · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI YOSHIMURA, MASAMI · 2008 to 2008
$344k
NCI NIH HHS CA13330NIAAA NIH HHS AA013148NIAAA NIH HHS R01 AA013148NIAAA NIH HHS R21 AA017303NIAAA NIH HHS R56 AA013148NIAID NIH HHS AI051519NIGMS NIH HHS GM070358NIGMS NIH HHS GM073913NIGMS NIH HHS R01 GM070358NIGMS NIH HHS R01 GM073913
6 · The paper itself

Abstract

We used a red chromophore formation pathway, in which the anionic red chromophore is formed from the neutral blue intermediate, to suggest a rational design strategy to develop blue fluorescent proteins with a tyrosine-based chromophore. The strategy was applied to red fluorescent proteins of the different genetic backgrounds, such as TagRFP, mCherry, HcRed1, M355NA, and mKeima, which all were converted into blue probes. Further improvement of the blue variant of TagRFP by random mutagenesis resulted in an enhanced monomeric protein, mTagBFP, characterized by the substantially higher brightness, the faster chromophore maturation, and the higher pH stability than blue fluorescent proteins with a histidine in the chromophore. The detailed biochemical and photochemical analysis indicates that mTagBFP is the true monomeric protein tag for multicolor and lifetime imaging, as well as the outstanding donor for green fluorescent proteins in Förster resonance energy transfer applications.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionColorFluorescence Resonance Energy TransferGenes, ReporterHeLa CellsHumansLuminescent ProteinsMolecular ProbesMolecular Sequence DataMutationPhotochemistryRed Fluorescent ProteinSequence AlignmentSequence HomologyLuminescent ProteinsMolecular ProbesRed Fluorescent Protein

Identifiers

PMID18940671
PMCPMC2585067

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.