Evidence map›Paper›PMID 18940669›Full record

ArticleChemistry & biology2008

A full-length group 1 bacterial sigma factor adopts a compact structure incompatible with DNA binding.

Edmund C Schwartz, Alexander Shekhtman, Kaushik Dutta, Matthew R Pratt, David Cowburn, Seth Darst, Tom W Muir

Open access · greenAbstract read
In one paragraph

Article in Chemistry & biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  11. Review
  12. Structural basis for transcription activation by Crl through tethering of σProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Review
  14. Article
  15. Article
  16. Solution structure of domain 1.1 of the σThe Journal of biological chemistry · 2017
    Article
  17. Article
  18. Crystal structure ofProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Edmund C SchwartzLaboratory of Synthetic Protein Chemistry, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.
Alexander Shekhtman
Kaushik Dutta
Matthew R Pratt
David Cowburn
Seth Darst
Tom W Muir
Rockefeller University · USNew York Structural Biology Center · US

Funding

E COLI RNA POLYMERASE SUBUNIT--STRUCTURE/FUNCTIONR01GM053759 · NIGMS · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 1996 to 2015
$6.9M
900 MHz NMR Spectrometer for Structural BiologyP41GM066354 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2006
$4.7M
Structure, Function and Applications of InteinsR01GM086868 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2008 to 2025
$4.4M
Regulation and Folding of a Multidomain Adaptor ProteinR01GM055843 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2002 to 2009
$2.7M
Segmental Labeling for Protein Structure by NMRR01EB001991 · NIBIB · ROCKEFELLER UNIVERSITY · PI MUIR, TOM · 2003 to 2007
$2.2M
CHEMICAL BASIS OF THE SH3 DOMAIN STRUCTURER29GM055843 · NIGMS · ROCKEFELLER UNIVERSITY · PI MUIR, TOM W · 1997 to 2001
$217k
Howard Hughes Medical InstituteNIBIB NIH HHS EB-001991NIBIB NIH HHS R01 EB001991NIGMS NIH HHS GM 053759-10NIGMS NIH HHS GM55843-11NIGMS NIH HHS P41 GM066354NIGMS NIH HHS P41 GM66354NIGMS NIH HHS R01 GM053759NIGMS NIH HHS R01 GM055843NIGMS NIH HHS R01 GM086868NIGMS NIH HHS R29 GM055843
6 · The paper itself

Abstract

The sigma factors are the key regulators of bacterial transcription initiation. Through direct read-out of promoter DNA sequence, they recruit the core RNA polymerase to sites of initiation, thereby dictating the RNA polymerase promoter-specificity. The group 1 sigma factors, which direct the vast majority of transcription initiation during log phase growth and are essential for viability, are autoregulated by an N-terminal sequence known as sigma1.1. We report the solution structure of Thermotoga maritima sigmaA sigma1.1. We additionally demonstrate by using chemical crosslinking strategies that sigma1.1 is in close proximity to the promoter recognition domains of sigmaA. We therefore propose that sigma1.1 autoinhibits promoter DNA binding of free sigmaA by stabilizing a compact organization of the sigma factor domains that is unable to bind DNA.

Indexed as

Amino Acid SequenceDNAModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Structure, TertiarySequence AlignmentSigma FactorThermotoga maritimaDNASigma Factor

Identifiers

PMID18940669
PMCPMC2677525
OpenAlexW2084608948

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.