Evidence map›Paper›PMID 18936056›Full record

ArticleMolecular & cellular proteomics : MCP2009

Artifactual sulfation of silver-stained proteins: implications for the assignment of phosphorylation and sulfation sites.

Marlene Gharib, Maria Marcantonio, Sylvia G Lehmann, Mathieu Courcelles, Sylvain Meloche, Alain Verreault, Pierre Thibault

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Novel oxidative modifications in redox-active cysteine residues.Molecular & cellular proteomics : MCP · 2011
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Marlene GharibInstitute of Research in Immunology and Cancer (IRIC), Université de Montréal, Montréal, Québec, Canada.
Maria Marcantonio
Sylvia G Lehmann
Mathieu Courcelles
Sylvain Meloche
Alain Verreault
Pierre Thibault
Institute for Research in Immunology and Cancer · CAUniversité de Montréal · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfation and phosphorylation are post-translational modifications imparting an isobaric 80-Da addition on the side chain of serine, threonine, or tyrosine residues. These two post-translational modifications are often difficult to distinguish because of their similar MS fragmentation patterns. Targeted MS identification of these modifications in specific proteins commonly relies on their prior separation using gel electrophoresis and silver staining. In the present investigation, we report a potential pitfall in the interpretation of these modifications from silver-stained gels due to artifactual sulfation of serine, threonine, and tyrosine residues by sodium thiosulfate, a commonly used reagent that catalyzes the formation of metallic silver deposits onto proteins. Detailed MS analyses of gel-separated protein standards and Escherichia coli cell extracts indicated that several serine, threonine, and tyrosine residues were sulfated using silver staining protocols but not following Coomassie Blue staining. Sodium thiosulfate was identified as the reagent leading to this unexpected side reaction, and the degree of sulfation was correlated with increasing concentrations of thiosulfate up to 0.02%, which is typically used for silver staining. The significance of this artifact is discussed in the broader context of sulfation and phosphorylation site identification from in vivo and in vitro experiments.

Indexed as

ArtifactsAmino AcidsAmino Acid SequenceAnimalsBacterial ProteinsCricetinaeEscherichia coliHumansHydroxylationMitogen-Activated Protein Kinase 3Molecular Sequence DataPeptidesPhosphopyruvate HydratasePhosphorylationProteinsSaccharomyces cerevisiaeAmino AcidsBacterial ProteinsMitogen-Activated Protein Kinase 3PeptidesPhosphopyruvate HydrataseProteinssodium thiosulfateSulfatesThiosulfates

Identifiers

PMID18936056
PMCPMC2649813
OpenAlexW2041761690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.