Evidence map›Paper›PMID 18931668›Full record

ArticleNature methods2008

Linking SNPs to CAG repeat length in Huntington's disease patients.

Wanzhao Liu, Lori A Kennington, H Diana Rosas, Steven Hersch, Jang-Ho Cha, Phillip D Zamore, Neil Aronin

Abstract read
In one paragraph

Article in Nature methods, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Investigational Assay for Haplotype Phasing of the Huntingtin Gene.Molecular therapy. Methods & clinical development · 2020
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Gene therapy for misfolding protein diseases of the central nervous system.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2013
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Tailor-made RNAi knockdown against triplet repeat disease-causing alleles.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Wanzhao LiuDepartment of Medicine, University of Massachusetts Medical School, 364 Plantation Street, Worcester, Massachusetts 01605, USA.
Lori A Kennington
H Diana Rosas
Steven Hersch
Jang-Ho Cha
Phillip D Zamore
Neil Aronin
University of Massachusetts Chan Medical School · USMaineGeneral Medical Center · USMassachusetts General Hospital · US

Funding

PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
Neuroimaging Biomarkers for disease-modyfying therapies in Hintington's diseaseP01NS058793 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI HERSCH, STEVEN M · 2008 to 2012
$6.6M
SIGNALING MECHANISMS IN NEURONAL DEGENERATIONR01NS038194 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ARONIN, NEIL · 1999 to 2014
$6.2M
Prospective Neuroimaging in Huntington's DiseaseR01NS042861 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI ROSAS, HERMINIA DIANA · 2003 to 2013
$5.6M
Understanding microRNA Biogenesis and FunctionR01GM065236 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2003 to 2014
$5.0M
Understanding the Mechanism of RNA Interference (RNAi)R01GM062862 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZAMORE, PHILLIP D · 2001 to 2009
$3.2M
Prospective Neuroimaging in Huntington's DiseaseR56NS042861 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI ROSAS, HERMINIA DIANA · 2014 to 2014
$870k
Howard Hughes Medical InstituteNIDDK NIH HHS P30 DK032520NIGMS NIH HHS R01 GM062862NIGMS NIH HHS R01 GM065236NINDS NIH HHS 1P01NS058793NINDS NIH HHS NS042861NINDS NIH HHS NS38194NINDS NIH HHS P01 NS058793NINDS NIH HHS R01 NS038194NINDS NIH HHS R01 NS042861NINDS NIH HHS R56 NS042861
6 · The paper itself

Abstract

Allele-specific silencing using small interfering RNAs targeting heterozygous single-nucleotide polymorphisms (SNPs) is a promising therapy for human trinucleotide repeat diseases such as Huntington's disease. Linking SNP identities to the two HTT alleles, normal and disease-causing, is a prerequisite for allele-specific RNA interference. Here we describe a method, SNP linkage by circularization (SLiC), to identify linkage between CAG repeat length and nucleotide identity of heterozygous SNPs using Huntington's disease patient peripheral blood samples.

Indexed as

HumansHuntington DiseaseMolecular Sequence DataPolymorphism, Single NucleotideTrinucleotide Repeats

Identifiers

PMID18931668
PMCPMC2587014
OpenAlexW2076063918

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.