Evidence map›Paper›PMID 18931662›Full record

ArticleNature cell biology2008

The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action.

Hongyan Xing, Nathan L Vanderford, Kevin D Sarge

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Maintaining Transcriptional Specificity Through Mitosis.Annual review of genomics and human genetics · 2022
    Review
  9. Review
  10. Article
  11. Dephosphorylation in nuclear reassembly after mitosis.Frontiers in cell and developmental biology · 2022
    Review
  12. Review
  13. Review
  14. Structures and implications of TBP-nucleosome complexes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Review
  17. International journal of molecular sciences · 2020
    Article
  18. Review
  19. Molecular characteristics of early-stage female germ cells revealed by RNA sequencing of low-input cells and analysis of genome-wide DNA methylation.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019
    Article
  20. Condensin action and compaction.Current genetics · 2019
    Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hongyan XingDepartment of Molecular and Cellular Biochemistry, Chandler Medical Center, University of Kentucky, Lexington, KY 40536, USA.
Nathan L Vanderford
Kevin D Sarge
Albert B. Chandler Hospital · US

Funding

Regulation of HSF1 and HSF2 by SUMO-1 ModificationR01GM064606 · NIGMS · UNIVERSITY OF KENTUCKY · PI SARGE, KEVIN D · 2003 to 2007
$1.1M
REGULATION OF PROTEIN PHOSPHATASE 2A BY CELLULAR PROTEINR01GM061053 · NIGMS · UNIVERSITY OF KENTUCKY · PI SARGE, KEVIN D · 2001 to 2004
$841k
NIGMS NIH HHS GM61053NIGMS NIH HHS R01 GM061053NIGMS NIH HHS R01 GM064606
6 · The paper itself

Abstract

To maintain phenotypes of cell lineages, cells must 'remember' which genes were active before mitosis entry and transmit this information to their daughter cells so that expression patterns can be faithfully re-established in G1. This phenomenon is called gene bookmarking. However, during mitosis transcription ceases, most sequence-specific proteins dissociate from DNA and the chromatin is tightly compacted, making it difficult to understand how gene activity 'memory' is maintained through this stage of the cell cycle. A feature of gene bookmarking is that in mitotic cells, the promoters of formerly active genes lack compaction, but how compaction of these regions is inhibited is unknown. Here we show that during mitosis, TATA-binding protein (TBP), which remains bound to DNA during mitosis, recruits PP2A. TBP also interacts with condensin to allow efficient dephosphorylation and inactivation of condensin near these promoters to inhibit their compaction. Further, ChIP-on-chip data show that TBP is bound to many chromosomal sites during mitosis, and is higher in transcribed regions but low in regions containing pseudogenes and genes whose expression is tissue-restricted. These results suggest that TBP is involved not only in gene transcription during interphase but also in preserving the memory of gene activity through mitosis to daughter cells.

Indexed as

GenesMitosisAdenosine TriphosphatasesDNA-Binding ProteinsEscherichia coliGlutathione TransferaseHeLa CellsHumansMultiprotein ComplexesProtein Phosphatase 2Recombinant ProteinsRNA, Small InterferingTATA-Box Binding ProteinAdenosine Triphosphatasescondensin complexesDNA-Binding ProteinsGlutathione TransferaseMultiprotein ComplexesPPP2CA protein, humanProtein Phosphatase 2Recombinant ProteinsRNA, Small InterferingTATA-Box Binding Protein

Identifiers

PMID18931662
PMCPMC2577711
OpenAlexW2042114196

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.