Evidence map›Paper›PMID 18931142›Full record

ArticlePlant physiology2008

Transcriptomic and reverse genetic analyses of branched-chain fatty acid and acyl sugar production in Solanum pennellii and Nicotiana benthamiana.

Stephen P Slocombe, Ines Schauvinhold, Ryan P McQuinn, Katrin Besser, Nicholas A Welsby, Andrea Harper, Naveed Aziz, Yi Li, Tony R Larson, James Giovannoni and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
  2. Article
  3. Trichome formation inFrontiers in plant science · 2026
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Pennelliiside D, a New Acyl Glucose fromMolecules (Basel, Switzerland) · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. QTL mapping of insect resistance components of Solanum galapagense.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Stephen P SlocombeDepartment of Biology, Area 7, University of York, York YO10 5YW, United Kingdom.
Ines Schauvinhold
Ryan P McQuinn
Katrin Besser
Nicholas A Welsby
Andrea Harper
Naveed Aziz
Yi Li
Tony R Larson
James Giovannoni
Richard A Dixon
Pierre Broun
University of York · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acyl sugars containing branched-chain fatty acids (BCFAs) are exuded by glandular trichomes of many species in Solanaceae, having an important defensive role against insects. From isotope-feeding studies, two modes of BCFA elongation have been proposed: (1) fatty acid synthase-mediated two-carbon elongation in the high acyl sugar-producing tomato species Solanum pennellii and Datura metel; and (2) alpha-keto acid elongation-mediated one-carbon increments in several tobacco (Nicotiana) species and a Petunia species. To investigate the molecular mechanisms underlying BCFAs and acyl sugar production in trichomes, we have taken a comparative genomic approach to identify critical enzymatic steps followed by gene silencing and metabolite analysis in S. pennellii and Nicotiana benthamiana. Our study verified the existence of distinct mechanisms of acyl sugar synthesis in Solanaceae. From microarray analyses, genes associated with alpha-keto acid elongation were found to be among the most strongly expressed in N. benthamiana trichomes only, supporting this model in tobacco species. Genes encoding components of the branched-chain keto-acid dehydrogenase complex were expressed at particularly high levels in trichomes of both species, and we show using virus-induced gene silencing that they are required for BCFA production in both cases and for acyl sugar synthesis in N. benthamiana. Functional analysis by down-regulation of specific KAS I genes and cerulenin inhibition indicated the involvement of the fatty acid synthase complex in BCFA production in S. pennellii. In summary, our study highlights both conserved and divergent mechanisms in the production of important defense compounds in Solanaceae and defines potential targets for engineering acyl sugar production in plants for improved pest tolerance.

Indexed as

3-Oxoacyl-(Acyl-Carrier-Protein) SynthaseAcyl Coenzyme ACarbohydratesFatty AcidsFatty Acid SynthasesGene Expression ProfilingGene Expression Regulation, PlantGene SilencingKeto AcidsMolecular Sequence DataNicotianaOligonucleotide Array Sequence AnalysisPlant ProteinsReverse Transcriptase Polymerase Chain ReactionSolanum3-Oxoacyl-(Acyl-Carrier-Protein) SynthaseAcyl Coenzyme ACarbohydratesFatty AcidsFatty Acid SynthasesKeto AcidsPlant Proteins

Identifiers

PMID18931142
PMCPMC2593661
OpenAlexW2138982827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.