Evidence map›Paper›PMID 18931124›Full record

ArticleJournal of bacteriology2008

Altered oligomerization properties of N316 mutants of Escherichia coli TyrR.

Takashi Koyanagi, Takane Katayama, Hideyuki Suzuki, Hidehiko Kumagai

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Research overview of L-DOPA production using a bacterial enzyme, tyrosine phenol-lyase.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2023
    Review
  2. Microbial production of isoquinoline alkaloids as plant secondary metabolites based on metabolic engineering research.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Takashi KoyanagiDivision of Integrated Life Science, Graduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.
Takane Katayama
Hideyuki Suzuki
Hidehiko Kumagai
Ishikawa Prefectural University · JPKyoto Institute of Technology · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcriptional regulator TyrR is known to undergo a dimer-to-hexamer conformational change in response to aromatic amino acids, through which it controls gene expression. In this study, we identified N316D as the second-site suppressor of Escherichia coli TyrR(E274Q), a mutant protein deficient in hexamer formation. N316 variants exhibited altered in vivo regulatory properties, and the most drastic changes were observed for TyrR(N316D) and TyrR(N316R) mutants. Gel filtration analyses revealed that the ligand-mediated oligomer formation was enhanced and diminished for TyrR(N316D) and TyrR(N316R), respectively, compared with the wild-type TyrR. ADP was substituted for ATP in the oligomer formation of TyrR(N316D).

Indexed as

Amino Acids, AromaticAmino Acid SubstitutionDNA, BacterialErwiniaEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialGenes, ReporterMutagenesis, Site-DirectedMutationPlasmidsPromoter Regions, GeneticProtein Structure, TertiaryRepressor ProteinsTranscription, GeneticTransformation, BacterialAmino Acids, AromaticDNA, BacterialEscherichia coli ProteinsRepressor ProteinsTyrR protein, E coli

Identifiers

PMID18931124
PMCPMC2593242
OpenAlexW2141957503

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.