Evidence map›Paper›PMID 18931103›Full record

ArticleJournal of bacteriology2009

The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients.

Matthew T G Holden, Helena M B Seth-Smith, Lisa C Crossman, Mohammed Sebaihia, Stephen D Bentley, Ana M Cerdeño-Tárraga, Nicholas R Thomson, Nathalie Bason, Michael A Quail, Sarah Sharp and 22 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 219 papers.

0numbers the graph read from it
0cells of the map it votes in
219citing papers in PubMed
33.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

219 citing papers in PubMed, 339 citations in OpenAlex.

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159 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

32 authors at 9 institutions in 5 countries.

Matthew T G HoldenThe Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, United Kingdom. mh3@sanger.ac.uk
Helena M B Seth-Smith
Lisa C Crossman
Mohammed Sebaihia
Stephen D Bentley
Ana M Cerdeño-Tárraga
Nicholas R Thomson
Nathalie Bason
Michael A Quail
Sarah Sharp
Inna Cherevach
Carol Churcher
Ian Goodhead
Heidi Hauser
Nancy Holroyd
Karen Mungall
Paul Scott
Danielle Walker
Brian White
Helen Rose
Pernille Iversen
Dalila Mil-Homens
Eduardo P C Rocha
Arsenio M Fialho
Adam Baldwin
Christopher Dowson
Bart G Barrell
John R Govan
Peter Vandamme
C Anthony Hart
Eshwar Mahenthiralingam
Julian Parkhill
Wellcome Sanger Institute · GBCardiff University · GBInstitute for Biotechnology and Bioengineering · PTUniversity of Warwick · GBCentre National de la Recherche Scientifique · FRGhent University · BEUniversity of Copenhagen · DKUniversity of Edinburgh · GBUniversity of Liverpool · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Bacterial infections of the lungs of cystic fibrosis (CF) patients cause major complications in the treatment of this common genetic disease. Burkholderia cenocepacia infection is particularly problematic since this organism has high levels of antibiotic resistance, making it difficult to eradicate; the resulting chronic infections are associated with severe declines in lung function and increased mortality rates. B. cenocepacia strain J2315 was isolated from a CF patient and is a member of the epidemic ET12 lineage that originated in Canada or the United Kingdom and spread to Europe. The 8.06-Mb genome of this highly transmissible pathogen comprises three circular chromosomes and a plasmid and encodes a broad array of functions typical of this metabolically versatile genus, as well as numerous virulence and drug resistance functions. Although B. cenocepacia strains can be isolated from soil and can be pathogenic to both plants and man, J2315 is representative of a lineage of B. cenocepacia rarely isolated from the environment and which spreads between CF patients. Comparative analysis revealed that ca. 21% of the genome is unique in comparison to other strains of B. cenocepacia, highlighting the genomic plasticity of this species. Pseudogenes in virulence determinants suggest that the pathogenic response of J2315 may have been recently selected to promote persistence in the CF lung. The J2315 genome contains evidence that its unique and highly adapted genetic content has played a significant role in its success as an epidemic CF pathogen.

Indexed as

Genome, BacterialBurkholderiaBurkholderia cepacia complexChromosome MappingChromosomes, BacterialCystic FibrosisDNA, BacterialDNA, CircularDNA PrimersDrug Resistance, MicrobialGene AmplificationHumansPlantsPlasmidsPolymerase Chain ReactionSputumDNA, BacterialDNA, CircularDNA Primers

Identifiers

PMID18931103
PMCPMC2612433
OpenAlexW2151906718

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.