Evidence map›Paper›PMID 18931038›Full record

ArticleDiabetes2009

Genome-wide linkage scan for genes influencing plasma triglyceride levels in the Veterans Administration Genetic Epidemiology Study.

Dawn K Coletta, Jennifer Schneider, Shirley L Hu, Thomas D Dyer, Sobha Puppala, Vidya S Farook, Rector Arya, Donna M Lehman, John Blangero, Ralph A DeFronzo and 2 more

Abstract read
In one paragraph

Article in Diabetes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. International journal of medical sciences · 2018
    Article
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  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Dawn K ColettaDivision of Diabetes, Department of Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA. dawn.coletta@asu.edu
Jennifer Schneider
Shirley L Hu
Thomas D Dyer
Sobha Puppala
Vidya S Farook
Rector Arya
Donna M Lehman
John Blangero
Ralph A DeFronzo
Ravindranath Duggirala
Christopher P Jenkinson

Funding

NIDDM SUSCEPTIBILITY GENES IN MEXICAN-AMERICANSR01DK047482 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEHMAN, DONNA M · 1993 to 2010
$5.4M
Identification of Prediabetes Genes by Expression Linkage AnalysisR01DK079195 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JENKINSON, CHRISTOPHER P · 2008 to 2013
$2.5M
GENETICS OF GALLBLADDER DISEASE IN MEXICAN AMERICANSR01DK053889 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI DUGGIRALA, RAVINDRANATH · 1998 to 2011
$2.3M
Type 2 Diabetes Gene Discovery Linked to 3p in HispanicsR01DK070746 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEHMAN, DONNA M · 2007 to 2009
$1.4M
GENETIC EPIDEMIOLOGY OF NIDDM IN MEXICAN AMERICANSR01DK042273 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI STERN, MICHAEL P · 1991 to 2000
$532k
NIDDK NIH HHS DK42273NIDDK NIH HHS DK47482NIDDK NIH HHS DK53889NIDDK NIH HHS DK70746NIDDK NIH HHS R01 DK047482NIDDK NIH HHS R01 DK053889NIDDK NIH HHS R01 DK070746NIDDK NIH HHS R01 DK079195
6 · The paper itself

Abstract

objectiveElevated plasma triglyceride concentration is a component of the insulin resistance syndrome and is commonly associated with type 2 diabetes, obesity, and coronary heart disease. The goal of our study was to perform a genome-wide linkage scan to identify genetic regions that influence variation in plasma triglyceride levels in families that are enriched with individuals with type 2 diabetes. RESEARCH DESIGN AND

methodsWe used phenotypic and genotypic data from 1,026 individuals distributed across 294 Mexican-American families, who were ascertained for type 2 diabetes, from the Veterans Administration Genetic Epidemiology Study (VAGES). Plasma triglyceride values were transformed, and a variance-components technique was used to conduct multipoint linkage analysis.

resultsAfter adjusting for the significant effects of sex and BMI, heritability for plasma triglycerides was estimated as 46 +/- 7% (P < 0.0001). Multipoint linkage analysis yielded the strongest evidence for linkage of plasma triglycerides near marker D12S391 on chromosome 12p (logarithm of odds [LOD] = 2.4). Our linkage signal on chromosome 12p provides independent replication of a similar finding in another Mexican-American sample from the San Antonio Family Diabetes Study (SAFDS). Combined multipoint linkage analysis of the VAGES and SAFDS data yielded significant evidence for linkage of plasma triglycerides to a genetic location between markers GATA49D12 and D12S391 on 12p (LOD = 3.8, empirical P value = 2.0 x 10(-5)). This region on 12p harbors the gene-encoding adiponectin receptor 2 (AdipoR2), where we previously have shown that multiple single nucleotide polymorphisms are associated with plasma triglyceride concentrations in the SAFDS. In the present study, we provided suggestive evidence in favor of association for rs929434 with triglyceride concentrations in the VAGES.

conclusionsCollectively, these results provide strong evidence for a major locus on chromosome 12p that influences plasma triglyceride levels in Mexican Americans.

Indexed as

VeteransChromosome MappingChromosomes, Human, Pair 12Diabetes Mellitus, Type 2Family HealthFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansLod ScoreMaleMexican AmericansMicrosatellite RepeatsMiddle AgedPhenotypeTriglycerides

Identifiers

PMID18931038
PMCPMC2606886

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.