Evidence map›Paper›PMID 18930919›Full record

ArticleThe Journal of biological chemistry2008

Identification of noncollagenous sites encoding specific interactions and quaternary assembly of alpha 3 alpha 4 alpha 5(IV) collagen: implications for Alport gene therapy.

Jeong Suk Kang, Selene Colon, Thomas Hellmark, Yoshikazu Sado, Billy G Hudson, Dorin-Bogdan Borza

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Collagen IV diseases: A focus on the glomerular basement membrane in Alport syndrome.Matrix biology : journal of the International Society for Matrix Biology · 2017
    Review
  2. Neonatal Fc receptor promotes immune complex-mediated glomerular disease.Journal of the American Society of Nephrology : JASN · 2014
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Th1 and Th17 cells induce proliferative glomerulonephritis.Journal of the American Society of Nephrology : JASN · 2009
    Article
  9. Collagen IVThe Journal of biological chemistry
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Jeong Suk KangDepartment of Medicine, Division of Nephrology, Vanderbilt University, Nashville, Tennessee 37232, USA.
Selene Colon
Thomas Hellmark
Yoshikazu Sado
Billy G Hudson
Dorin-Bogdan Borza
Vanderbilt University · USLund University · SEShigei Medical Research Institute · JP

Funding

TYPE IV COLLAGEN, LAMININS, AND INTEGRINS IN NORMAL AND DISEASED GLOMERULIP01DK065123 · NIDDK · VANDERBILT UNIVERSITY · PI HUDSON, BILLY GERALD · 2003 to 2012
$12.9M
STUDIES ON THE STRUCTURE OF BASEMENT MEMBRANESR37DK018381 · NIDDK · VANDERBILT UNIVERSITY · PI HUDSON, BILLY GERALD · 2000 to 2009
$4.5M
Molecular pathogenesis of anti-glomerular basement membrane nephritisR01DK080799 · NIDDK · VANDERBILT UNIVERSITY · PI BORZA, DORIN-BOGDAN · 2008 to 2012
$1.6M
Age-related structural alterations in loss of self-tolerance to a3(IV) collagenR21AI069874 · NIAID · VANDERBILT UNIVERSITY · PI BORZA, DORIN-BOGDAN · 2006 to 2007
$403k
NIAID NIH HHS R21 AI069874NIDDK NIH HHS P01 DK065123NIDDK NIH HHS R01 DK080799NIDDK NIH HHS R37 DK18381
6 · The paper itself

Abstract

Defective assembly of alpha 3 alpha 4 alpha 5(IV) collagen in the glomerular basement membrane causes Alport syndrome, a hereditary glomerulonephritis progressing to end-stage kidney failure. Assembly of collagen IV chains into heterotrimeric molecules and networks is driven by their noncollagenous (NC1) domains, but the sites encoding the specificity of these interactions are not known. To identify the sites directing quaternary assembly of alpha 3 alpha 4 alpha 5(IV) collagen, correctly folded NC1 chimeras were produced, and their interactions with other NC1 monomers were evaluated. All alpha1/alpha 5 chimeras containing alpha 5 NC1 residues 188-227 replicated the ability of alpha 5 NC1 to bind to alpha3NC1 and co-assemble into NC1 hexamers. Conversely, substitution of alpha 5 NC1 residues 188-227 by alpha1NC1 abolished these quaternary interactions. The amino-terminal 58 residues of alpha3NC1 encoded binding to alpha 5 NC1, but this interaction was not sufficient for hexamer co-assembly. Because alpha 5 NC1 residues 188-227 are necessary and sufficient for assembly into alpha 3 alpha 4 alpha 5 NC1 hexamers, whereas the immunodominant alloantigenic sites of alpha 5 NC1 do not encode specific quaternary interactions, the findings provide a basis for the rational design of less immunogenic alpha 5(IV) collagen constructs for the gene therapy of X-linked Alport patients.

Indexed as

Amino Acid SequenceAntigensBinding SitesCollagen Type IVGenetic TherapyHumansModels, MolecularMolecular Sequence DataNephritis, HereditaryProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryRecombinant Fusion ProteinsRecombinant ProteinsSequence Homology, Amino AcidAntigensCollagen Type IVRecombinant Fusion ProteinsRecombinant Proteins

Identifiers

PMID18930919
PMCPMC2596392
OpenAlexW1996413267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.