Evidence map›Paper›PMID 18927629›Full record

ArticlePLoS genetics2008

Regulatory network analyses reveal genome-wide potentiation of LIF signaling by glucocorticoids and define an innate cell defense response.

David Langlais, Catherine Couture, Aurélio Balsalobre, Jacques Drouin

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. MUC16 Regulates TSPYL5 for Lung Cancer Cell Growth and Chemoresistance by Suppressing p53.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Article
  10. Review
  11. Glucocorticoid receptors: finding the middle ground.The Journal of clinical investigation · 2017
    Review
  12. Article
  13. Stat3 Controls Tubulointerstitial Communication during CKD.Journal of the American Society of Nephrology : JASN · 2016
    Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

David LanglaisLaboratoire de Génétique Moléculaire, Institut de Recherches Cliniques de Montréal, Montréal, Quebec, Canada.
Catherine Couture
Aurélio Balsalobre
Jacques Drouin
Montreal Clinical Research Institute · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While the hypothalamo-pituitary-adrenal axis (HPA) activates a general stress response by increasing glucocorticoid (Gc) synthesis, biological stress resulting from infections triggers the inflammatory response through production of cytokines. The pituitary gland integrates some of these signals by responding to the pro-inflammatory cytokines IL6 and LIF and to a negative Gc feedback loop. The present work used whole-genome approaches to define the LIF/STAT3 regulatory network and to delineate cross-talk between this pathway and Gc action. Genome-wide ChIP-chip identified 3,449 STAT3 binding sites, whereas 2,396 genes regulated by LIF and/or Gc were found by expression profiling. Surprisingly, LIF on its own changed expression of only 85 genes but the joint action of LIF and Gc potentiated the expression of more than a thousand genes. Accordingly, activation of both LIF and Gc pathways also potentiated STAT3 and GR recruitment to many STAT3 targets. Our analyses revealed an unexpected gene cluster that requires both stimuli for delayed activation; 83% of the genes in this cluster are involved in different cell defense mechanisms. Thus, stressors that trigger both general stress and inflammatory responses lead to activation of a stereotypic innate cellular defense response.

Indexed as

Acute-Phase ProteinsAnimalsBinding SitesCell LineChromatin ImmunoprecipitationDexamethasoneFeedback, PhysiologicalGene Expression ProfilingGene Regulatory NetworksGenomeGlucocorticoidsHypothalamo-Hypophyseal SystemImmunity, InnateLeukemia Inhibitory FactorLipocalin-2LipocalinsAcute-Phase ProteinsDexamethasoneGlucocorticoidsLcn2 protein, mouseLeukemia Inhibitory FactorLif protein, mouseLipocalin-2LipocalinsOncogene ProteinsReceptors, GlucocorticoidRecombinant ProteinsStat3 protein, mouseSTAT3 Transcription Factor

Identifiers

PMID18927629
PMCPMC2562516
OpenAlexW1997530927

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.