Evidence map›Paper›PMID 18927626›Full record

ArticlePLoS genetics2008

Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch.

Dan Zhou, Jin Xue, James C K Lai, Nicholas J Schork, Kevin P White, Gabriel G Haddad

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 142 citations in OpenAlex.

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  17. Quantifying simultaneous innovations in evolutionary medicine.Theory in biosciences = Theorie in den Biowissenschaften · 2020
    Article
  18. Article
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  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Dan ZhouDepartment of Pediatrics, University of California San Diego, La Jolla, California, United States of America. 2zhou@ucsd.edu
Jin Xue
James C K Lai
Nicholas J Schork
Kevin P White
Gabriel G Haddad
University of California, San Diego · USIdaho State University · USScripps Research Institute · USUniversity of Chicago · US

Funding

THE IMPACT OF HYPOXIA ON DEVELOPMENT AND REMODELING OF CARDIC INTERCALATED DISKP01HD032573 · NICHD · YALE UNIVERSITY · PI HADDAD, GABRIEL G · 1995 to 2009
$12.1M
MOLECULAR BASIS OF CELL TOLERANCE TO 02 DEPRIVATIONR01NS037756 · NINDS · YESHIVA UNIVERSITY · PI HADDAD, GABRIEL G · 2000 to 2009
$4.1M
NICHD NIH HHS P01 HD032573NICHD NIH HHS P01HD-032573NINDS NIH HHS R01 NS037756NINDS NIH HHS R01NS-037756
6 · The paper itself

Abstract

Hypoxia-induced cell injury has been related to multiple pathological conditions. In order to render hypoxia-sensitive cells and tissues resistant to low O2 environment, in this current study, we used Drosophila melanogaster as a model to dissect the mechanisms underlying hypoxia-tolerance. A D. melanogaster strain that lives perpetually in an extremely low-oxygen environment (4% O2, an oxygen level that is equivalent to that over about 4,000 m above Mt. Everest) was generated through laboratory selection pressure using a continuing reduction of O2 over many generations. This phenotype is genetically stable since selected flies, after several generations in room air, survive at this low O2 level. Gene expression profiling showed striking differences between tolerant and naïve flies, in larvae and adults, both quantitatively and qualitatively. Up-regulated genes in the tolerant flies included signal transduction pathways (e.g., Notch and Toll/Imd pathways), but metabolic genes were remarkably down-regulated in the larvae. Furthermore, a different allelic frequency and enzymatic activity of the triose phosphate isomerase (TPI) was present in the tolerant versus naïve flies. The transcriptional suppressor, hairy, was up-regulated in the microarrays and its binding elements were present in the regulatory region of the specifically down-regulated metabolic genes but not others, and mutations in hairy significantly reduced hypoxia tolerance. We conclude that, the hypoxia-selected flies: (a) altered their gene expression and genetic code, and (b) coordinated their metabolic suppression, especially during development, with hairy acting as a metabolic switch, thus playing a crucial role in hypoxia-tolerance.

Indexed as

AltitudeAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsCitric Acid CycleDisease Models, AnimalDNADrosophila melanogasterDrosophila ProteinsElectron TransportGene ExpressionGene Expression ProfilingGenes, InsectGlycolysisHypoxiaLarvaBasic Helix-Loop-Helix ProteinsDNADrosophila Proteinshairy protein, DrosophilaRepressor Proteins

Identifiers

PMID18927626
PMCPMC2556400
OpenAlexW2036337660

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.