Evidence map›Paper›PMID 18923449›Full record

ArticleThe Journal of investigative dermatology2009

Further genetic evidence for three psoriasis-risk genes: ADAM33, CDKAL1, and PTPN22.

Yonghong Li, Wilson Liao, Monica Chang, Steven J Schrodi, Nam Bui, Joseph J Catanese, Annie Poon, Nori Matsunami, Kristina P Callis-Duffin, Mark F Leppert and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 3 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 3 syntheses or guidelines pooled it, 82 citations in OpenAlex.

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  16. The Protein Tyrosine Phosphatase Nonreceptor 22 (Clinical medicine insights. Arthritis and musculoskeletal disorders · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Yonghong LiCelera, Alameda, California 94502, USA. yonghong.li@celera.com
Wilson Liao
Monica Chang
Steven J Schrodi
Nam Bui
Joseph J Catanese
Annie Poon
Nori Matsunami
Kristina P Callis-Duffin
Mark F Leppert
Anne M Bowcock
Pui-Yan Kwok
Gerald G Krueger
Ann B Begovich
University of Utah · USUniversity of California, San Francisco · USCompanhia Energética de Pernambuco · BRWashington University in St. Louis · US

Funding

VIRAL DAMAGE TO BRAIN AND NEUROMUSCULAR SYSTEMM01RR000064 · NCRR · UNIVERSITY OF UTAH · PI SWOBODA, KATHRYN J. · 1985 to 2008
$21.7M
UCSF Dermatology Training GrantT32AR007175 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Wilson Liao, Michael David Rosenblum · 1986 to 2026
$6.1M
Genome-Wide SNP Association in PsoriasisR01AR050266 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY · 2007 to 2016
$5.7M
NCRR NIH HHS M01 RR000064NCRR NIH HHS M01-RR00064NIAMS NIH HHS R01 AR050266NIAMS NIH HHS R01AR050266NIAMS NIH HHS T32 AR007175
6 · The paper itself

Abstract

Predisposition to psoriasis is known to be affected by genetic variation in HLA-C, IL12B, and IL23R, and although other psoriasis-associated variants have been identified, incontrovertible statistical evidence for these markers has not yet been obtained. To help resolve this issue, we tested 15 single-nucleotide polymorphisms (SNPs) from 7 putative psoriasis-risk genes in 1,448 psoriasis patients and 1,385 control subjects; 3 SNPs, rs597980 in ADAM33, rs6908425 in CDKAL1 and rs3789604 in PTPN22, were significant with the same risk allele as in prior reports (one-sided P<0.05, false discovery rate<0.15). These three markers were tested in a fourth sample set (599 cases and 299 controls); one marker, rs597980, replicated (one-sided P<0.05) and the other two had odds ratios with the same directionality as in the original sample sets. Mantel-Haenszel meta-analyses of all available case-control data, including those published by other groups, showed that these three markers were highly significant (rs597980: P=0.0057 (2,025 cases and 1,597 controls), rs6908425: P=1.57 x 10(-5) (3,206 cases and 4,529 controls), and rs3789604: P=3.45 x 10(-5) (2,823 cases and 4,066 controls)). These data increase the likelihood that ADAM33, CDKAL1, and PTPN22 are true psoriasis-risk genes.

Indexed as

Polymorphism, Single NucleotideADAM ProteinsAdultAllelesCase-Control StudiesCyclin-Dependent Kinase 5FemaleHaplotypesHumansMaleModels, GeneticProtein Tyrosine Phosphatase, Non-Receptor Type 2PsoriasisRiskRisk FactorstRNA MethyltransferasesADAM33 protein, humanADAM ProteinsCDKAL1 protein, humanCyclin-Dependent Kinase 5Protein Tyrosine Phosphatase, Non-Receptor Type 2PTPN2 protein, humantRNA Methyltransferases

Identifiers

PMID18923449
PMCPMC4130997
OpenAlexW2070926469

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.