Evidence map›Paper›PMID 18923417›Full record

ArticleThe EMBO journal2008

Localization of Smc5/6 to centromeres and telomeres requires heterochromatin and SUMO, respectively.

Stephanie Pebernard, Lana Schaffer, Daniel Campbell, Steven R Head, Michael N Boddy

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 78 citations in OpenAlex.

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  18. Article
  19. SMC complexes: from DNA to chromosomes.Nature reviews. Molecular cell biology · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Stephanie PebernardDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Lana Schaffer
Daniel Campbell
Steven R Head
Michael N Boddy
Scripps Research Institute · US

Funding

Studies of the Rad60-Smc5-Smc6 DNA Repair ComplexR01GM068608 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI BODDY, MICHAEL N · 2003 to 2020
$6.2M
NIGMS NIH HHS GM0680608NIGMS NIH HHS R01 GM068608
6 · The paper itself

Abstract

The Smc5/6 holocomplex executes key functions in genome maintenance that include ensuring the faithful segregation of chromosomes at mitosis and facilitating critical DNA repair pathways. Smc5/6 is essential for viability and therefore, dissecting its chromosome segregation and DNA repair roles has been challenging. We have identified distinct epigenetic and post-translational modifications that delineate roles for fission yeast Smc5/6 in centromere function, versus replication fork-associated DNA repair. We monitored Smc5/6 subnuclear and genomic localization in response to different replicative stresses, using fluorescence microscopy and chromatin immunoprecipitation (ChIP)-on-chip methods. Following hydroxyurea treatment, and during an unperturbed S phase, Smc5/6 is transiently enriched at the heterochromatic outer repeats of centromeres in an H3-K9 methylation-dependent manner. In contrast, methyl methanesulphonate treatment induces the accumulation of Smc5/6 at subtelomeres, in an Nse2 SUMO ligase-dependent, but H3-K9 methylation-independent manner. Finally, we determine that Smc5/6 loads at all genomic tDNAs, a phenomenon that requires intact consensus TFIIIC-binding sites in the tDNAs.

Indexed as

Carrier ProteinsCell Cycle ProteinsCell NucleusCentromereChromosomal Proteins, Non-HistoneDNA, FungalDNA ReplicationHeterochromatinHydroxyureaMethyl MethanesulfonateMutagensNucleic Acid Synthesis InhibitorsSchizosaccharomycesSchizosaccharomyces pombe ProteinsSmall Ubiquitin-Related Modifier ProteinsTelomereCarrier ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA, FungalHeterochromatinHydroxyureaMethyl MethanesulfonateMutagensNse2 protein, S pombeNse4 protein, S pombeNucleic Acid Synthesis InhibitorsSchizosaccharomyces pombe ProteinsSmall Ubiquitin-Related Modifier ProteinsSmc5 protein, S pombesmc6 protein, S pombe

Identifiers

PMID18923417
PMCPMC2585169
OpenAlexW2047978738

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.