Evidence map›Paper›PMID 18854415›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole (Urotrichus talpoides).

Satoru Arai, Satoshi D Ohdachi, Mitsuhiko Asakawa, Hae Ji Kang, Gabor Mocz, Jiro Arikawa, Nobuhiko Okabe, Richard Yanagihara

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. ZoonoticViruses · 2023
    Review
  7. Article
  8. Divergent Hantavirus in Somali Shrews (Pathogens (Basel, Switzerland) · 2023
    Article
  9. Article
  10. A Brief History of Bunyaviral FamilyDiseases (Basel, Switzerland) · 2023
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Viruses · 2019
    Article
  18. Article
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Satoru AraiInfectious Disease Surveillance Center, National Institute of Infectious Diseases, Tokyo 162-8640, Japan.
Satoshi D Ohdachi
Mitsuhiko Asakawa
Hae Ji Kang
Gabor Mocz
Jiro Arikawa
Nobuhiko Okabe
Richard Yanagihara
University of Hawaiʻi at Mānoa · USHokkaido University · JPNational Institute of Infectious Diseases · JPRakuno Gakuen University · JP

Funding

WORLDWIDE EPIDEMIOLOGY &EPIZOOTIOLOGY OF HANTAVIRUSG12RR003061 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI OSTRANDER, GARY K · 1986 to 2011
$32.3M
UHI COBRE: P3: GROUP A STREPT IN RELATION TO ACUTE RHEUMATIC FEVER IN HAWAIIP20RR018727 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI HOANG, TUNG T · 2003 to 2011
$13.8M
Intraspecies Transmission and Infectivity of Insectivore-Borne HantavirusesR01AI075057 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2008 to 2011
$1.5M
NCRR NIH HHS G12 RR003061NCRR NIH HHS G12RR003061NCRR NIH HHS P20 RR018727NCRR NIH HHS P20RR018727NIAID NIH HHS R01 AI075057NIAID NIH HHS R01AI075057
6 · The paper itself

Abstract

Recent molecular evidence of genetically distinct hantaviruses in shrews, captured in widely separated geographical regions, corroborates decades-old reports of hantavirus antigens in shrew tissues. Apart from challenging the conventional view that rodents are the principal reservoir hosts, the recently identified soricid-borne hantaviruses raise the possibility that other soricomorphs, notably talpids, similarly harbor hantaviruses. In analyzing RNA extracts from lung tissues of the Japanese shrew mole (Urotrichus talpoides), captured in Japan between February and April 2008, a hantavirus genome, designated Asama virus (ASAV), was detected by RT-PCR. Pairwise alignment and comparison of the S-, M-, and L-segment nucleotide and amino acid sequences indicated that ASAV was genetically more similar to hantaviruses harbored by shrews than by rodents. However, the predicted secondary structure of the ASAV nucleocapsid protein was similar to that of rodent- and shrew-borne hantaviruses, exhibiting the same coiled-coil helix at the amino terminus. Phylogenetic analyses, using the maximum-likelihood method and other algorithms, consistently placed ASAV with recently identified soricine shrew-borne hantaviruses, suggesting a possible host-switching event in the distant past. The discovery of a mole-borne hantavirus enlarges our concepts about the complex evolutionary history of hantaviruses.

Indexed as

PhylogenyAmino Acid MotifsAnimalsBase SequenceDNA, MitochondrialJapanMolecular Sequence DataMolesOrthohantavirusRNA, MessengerSequence AnalysisViral ProteinsDNA, MitochondrialRNA, MessengerViral Proteins

Identifiers

PMID18854415
PMCPMC2567236
OpenAlexW2015182643

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.