Evidence map›Paper›PMID 18854162›Full record

ArticleCell2008

Global transcriptional repression in C. elegans germline precursors by regulated sequestration of TAF-4.

Tugba Guven-Ozkan, Yuichi Nishi, Scott M Robertson, Rueyling Lin

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 117 citations in OpenAlex.

  1. Review
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  19. Initial characterization of gap phase introduction in every cell cycle ofFrontiers in cell and developmental biology · 2022
    Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tugba Guven-OzkanDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yuichi Nishi
Scott M Robertson
Rueyling Lin
The University of Texas Southwestern Medical Center · US

Funding

Transcriptional Regulation by the Wnt Effector POP-1R01HD037933 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI LIN, RUEYLING · 2000 to 2014
$4.5M
REPROGRAMMING BY mRNA CLEARANCE: THE MAT-TO-ZYG TRANSITIONR01GM084198 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI LIN, RUEYLING, ZHANG, MICHAEL Q · 2009 to 2018
$2.8M
NICHD NIH HHS HD37933NICHD NIH HHS R01 HD037933NIGMS NIH HHS R01 GM084198
6 · The paper itself

Abstract

In C. elegans, four asymmetric divisions, beginning with the zygote (P0), generate transcriptionally repressed germline blastomeres (P1-P4) and somatic sisters that become transcriptionally active. The protein PIE-1 represses transcription in the later germline blastomeres but not in the earlier germline blastomeres P0 and P1. We show here that OMA-1 and OMA-2, previously shown to regulate oocyte maturation, repress transcription in P0 and P1 by binding to and sequestering in the cytoplasm TAF-4, a component critical for assembly of TFIID and the pol II preinitiation complex. OMA-1/2 binding to TAF-4 is developmentally regulated, requiring phosphorylation by the DYRK kinase MBK-2, which is activated at meiosis II after fertilization. OMA-1/2 are normally degraded after the first mitosis, but ectopic expression of wild-type OMA-1 is sufficient to repress transcription in both somatic and later germline blastomeres. We propose that phosphorylation by MBK-2 serves as a developmental switch, converting OMA-1/2 from oocyte to embryo regulators.

Indexed as

Amino Acid SequenceAnimalsBlastomeresCaenorhabditis elegansCaenorhabditis elegans ProteinsCarrier ProteinsGene Expression Regulation, DevelopmentalHistonesMolecular Sequence DataOocytesPhosphorylationProtein Structure, TertiaryProtein-Tyrosine KinasesRepressor ProteinsTranscription FactorsZygoteCaenorhabditis elegans ProteinsCarrier ProteinsHistonesMBK-2 protein, C elegansOMA-1 protein, C elegansoma-2 protein, C elegansProtein-Tyrosine KinasesRepressor ProteinsTAF-12 protein, C elegansTAF-4 protein, C elegansTranscription Factors

Identifiers

PMID18854162
PMCPMC2652481
OpenAlexW2118706074

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.