ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specific.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 41 citations in OpenAlex.
- Histopathological and Ultrastructural Observations ofJournal of fungi (Basel, Switzerland) · 2025Article
- Temporal proteomic profiling via 4D-DIA reveals early defense mechanisms and core resistance determinants in soybean against Phakopsora pachyrhizi.Stress biology · 2025Article
- RNA-Seq and Comparative Transcriptomic Analyses of Asian Soybean Rust Resistant and Susceptible Soybean Genotypes Provide Insights into Identifying Disease Resistance Genes.International journal of molecular sciences · 2023Article
- Transcriptome-Based Analysis of Tomato Genotypes Resistant to Bacterial Spot (International journal of molecular sciences · 2020Article
- High-Resolution Mapping in Two RIL Populations Refines Major "QTL Hotspot" Regions for Seed Size and Shape in Soybean (International journal of molecular sciences · 2020Article
- Genomics of Plant Disease Resistance in Legumes.Frontiers in plant science · 2019Review
- Polyamines and Legumes: Joint Stories of Stress, Nitrogen Fixation and Environment.Frontiers in plant science · 2019Review
- Fighting Asian Soybean Rust.Frontiers in plant science · 2016Review
- Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection.BMC plant biology · 2014Article
- Effect of Fusarium virguliforme phytotoxin on soybean gene expression suggests a role in multidimensional defence.Molecular plant pathology · 2013Article
- Phytohormone signaling pathway analysis method for comparing hormone responses in plant-pest interactions.BMC research notes · 2012Article
- Ubiquitous urease affects soybean susceptibility to fungi.Plant molecular biology · 2012Article
- Gene expression profiling of resistant and susceptible soybean lines infected with soybean cyst nematode.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Biphasic gene expression changes elicited by Phakopsora pachyrhizi in soybean correlate with fungal penetration and haustoria formation.Plant physiology · 2011Article
- Article
- Transcriptome analysis of resistant and susceptible genotypes of Glycine tomentella during Phakopsora pachyrhizi infection reveals novel rust resistance genes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Genomics of fungal disease resistance in tomato.Current genomics · 2010Article
- Phakopsora pachyrhizi, the causal agent of Asian soybean rust.Molecular plant pathology · 2010Review
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Authors and funding
6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Understanding plant host response to a pathogen such as Phakopsora pachyrhizi, the causal agent of Asian soybean rust (ASR), under different environmental conditions and growth stages is crucial for developing a resistant plant variety. The main objective of this study was to perform global transcriptome profiling of P. pachyrhizi-exposed soybean (Glycine max) with susceptible reaction to the pathogen from two distinct developmental growth stages using whole genome Affymetrix microarrays of soybean followed by confirmation using a resistant genotype. Soybean cv. 5601T (susceptible to ASR) at the V(4) and R(1) growth stages and Glycine tomentella (resistant to ASR) plants were inoculated with P. pachyrhizi and leaf samples were collected after 72 h of inoculation for microarray analysis. Upon analyzing the data using Array Assist software at 5% false discovery rate (FDR), a total of 5,056 genes were found significantly differentially expressed at V(4) growth stage, of which 2,401 were up-regulated, whereas 579 were found differentially expressed at R(1) growth stage, of which 264 were up-regulated. There were 333 differentially expressed common genes between the V(4) and R(1) growth stages, of which 125 were up-regulated. A large difference in number of differentially expressed genes between the two growth stages indicates that the gene expression is growth-stage-specific. We performed real-time RT-PCR analysis on nine of these genes from both growth stages and both plant species and found results to be congruent with those from the microarray analysis.
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