Evidence map›Paper›PMID 18852288›Full record

ArticleMolecular and cellular biology2008

Characterization of human GTPBP3, a GTP-binding protein involved in mitochondrial tRNA modification.

Magda Villarroya, Silvia Prado, Juan M Esteve, Miguel A Soriano, Carmen Aguado, David Pérez-Martínez, José I Martínez-Ferrandis, Lucía Yim, Victor M Victor, Elvira Cebolla and 3 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. Pooled it
  2. Biallelic variants in GTPBP3: New patients, phenotypic spectrum, and outcome.Annals of clinical and translational neurology · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Novel Mutations in theFrontiers in genetics · 2021
    Article
  12. A Natural Variation inThe Plant cell · 2020
    Article
  13. tRNA cleavage: a new insight.Neural regeneration research · 2020
    Review
  14. Article
  15. The mammalian mitochondrial epitranscriptome.Biochimica et biophysica acta. Gene regulatory mechanisms · 2019
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Magda VillarroyaLaboratorio de Genética Molecular, Centro de Investigación Príncipe Felipe, Avenida Autopista del Saler, 16-3, 46012 Valencia, Spain.
Silvia Prado
Juan M Esteve
Miguel A Soriano
Carmen Aguado
David Pérez-Martínez
José I Martínez-Ferrandis
Lucía Yim
Victor M Victor
Elvira Cebolla
Asunción Montaner
Erwin Knecht
M-Eugenia Armengod
Centro de Investigación Biomédica en Red · ESHospital Universitario Doctor Peset · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human GTPBP3 is an evolutionarily conserved, multidomain protein involved in mitochondrial tRNA modification. Characterization of its biochemical properties and the phenotype conferred by GTPBP3 inactivation is crucial to understanding the role of this protein in tRNA maturation and its effects on mitochondrial respiration. We show that the two most abundant GTPBP3 isoforms exhibit moderate affinity for guanine nucleotides like their bacterial homologue, MnmE, although they hydrolyze GTP at a 100-fold lower rate. This suggests that regulation of the GTPase activity, essential for the tRNA modification function of MnmE, is different in GTPBP3. In fact, potassium-induced dimerization of the G domain leads to stimulation of the GTPase activity in MnmE but not in GTPBP3. The GTPBP3 N-terminal domain mediates a potassium-independent dimerization, which appears as an evolutionarily conserved property of the protein family, probably related to the construction of the binding site for the one-carbon-unit donor in the modification reaction. Partial inactivation of GTPBP3 by small interfering RNA reduces oxygen consumption, ATP production, and mitochondrial protein synthesis, while the degradation of these proteins slightly increases. It also results in mitochondria with defective membrane potential and increased superoxide levels. These phenotypic traits suggest that GTPBP3 defects contribute to the pathogenesis of some oxidative phosphorylation diseases.

Indexed as

Alternative SplicingAnimalsCell LineEscherichia coli ProteinsExonsGene Expression RegulationGene Knockout TechniquesGTP-Binding ProteinsGTP PhosphohydrolasesGuanine NucleotidesHumansIntronsMiceMitochondriaMolecular StructureOxygen ConsumptionEscherichia coli ProteinsGTP-Binding ProteinsGTPBP3 protein, humanGTP PhosphohydrolasesGuanine NucleotidesMnmE protein, E coliProtein IsoformsRNA, Small InterferingRNA, Transfer

Identifiers

PMID18852288
PMCPMC2593442
OpenAlexW2119184618

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.