Evidence map›Paper›PMID 18852115›Full record

ArticleMolecular cancer therapeutics2008

Asparagine synthetase is a predictive biomarker of L-asparaginase activity in ovarian cancer cell lines.

Philip L Lorenzi, Jenny Llamas, Michele Gunsior, Laurent Ozbun, William C Reinhold, Sudhir Varma, Helen Ji, Hijoo Kim, Amy A Hutchinson, Elise C Kohn and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cancer therapeutics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 92 citations in OpenAlex.

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  11. Alterations in cellular metabolisms after Imatinib therapy: a review.Medical oncology (Northwood, London, England) · 2022
    Review
  12. Frontiers in oncology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Philip L LorenziGenomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, Maryland, USA.
Jenny Llamas
Michele Gunsior
Laurent Ozbun
William C Reinhold
Sudhir Varma
Helen Ji
Hijoo Kim
Amy A Hutchinson
Elise C Kohn
Paul K Goldsmith
Michael J Birrer
John N Weinstein
Laboratory of Molecular Genetics · PLCenter for Cancer Research · USScience Applications International Corporation (United States) · US

Funding

Signaling Pathways as Molecular Targets in Angiogenesis and MicroenvironmentZIASC009374 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI KOHN, ELISE C. · 2009 to 2013
$1.2M
Asparagine Synthetase as a Biomarker for L-asparaginase Rx of Ovarian CancerZ01BC010823 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WEINSTEIN, JOHN N · 2007 to 2008
$749k
The Use of Transcriptional Factors as Targets and Agents in CarcinogenesisZIASC000165 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI BIRRER, MICHAEL · 2009 to 2009
$187k
Intramural NIH HHS Z01 BC010823Intramural NIH HHS Z99 CA999999NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

We recently used RNA interference to show that a negative correlation of L-asparaginase (L-ASP) chemotherapeutic activity with asparagine synthetase (ASNS) expression in the ovarian subset of the NCI-60 cell line panel is causal. To determine whether that relationship would be sustained in a larger, more diverse set of ovarian cell lines, we have now measured ASNS mRNA expression using microarrays and a branched-DNA RNA assay, ASNS protein expression using an electrochemiluminescent immunoassay, and L-ASP activity using an MTS assay on 19 human ovarian cancer cell lines. Contrary to our previous findings, L-ASP activity was only weakly correlated with ASNS mRNA expression; Pearson's correlation coefficients were r = -0.21 for microarray data and r = -0.39 for the branched-DNA RNA assay, with just the latter being marginally statistically significant (P = 0.047, one-tailed). ASNS protein expression measured by liquid-phase immunoassay exhibited a much stronger correlation (r = -0.65; P = 0.0014, one-tailed). We conclude that ASNS protein expression measured by immunoassay is a strong univariate predictor of L-ASP activity in ovarian cancer cell lines. These findings provide rationale for evaluation of ASNS protein expression as a predictive biomarker of clinical L-ASP activity in ovarian cancer.

Indexed as

AsparaginaseAspartate-Ammonia LigaseBiomarkers, TumorCell Line, TumorDNA FingerprintingFemaleGene Expression Regulation, NeoplasticHumansOligonucleotide Array Sequence AnalysisOvarian NeoplasmsRNA, MessengerAsparaginaseAspartate-Ammonia LigaseBiomarkers, TumorRNA, Messenger

Identifiers

PMID18852115
PMCPMC4123961
OpenAlexW1969078659

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.