Evidence map›Paper›PMID 18851874›Full record

ArticleThe Journal of allergy and clinical immunology2008

Hypomorphic nuclear factor-kappaB essential modulator mutation database and reconstitution system identifies phenotypic and immunologic diversity.

Eric P Hanson, Linda Monaco-Shawver, Laura A Solt, Lisa A Madge, Pinaki P Banerjee, Michael J May, Jordan S Orange

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 1 synthesis or guideline pooled it, 248 citations in OpenAlex.

  1. Monogenic etiologies of persistent human papillomavirus infections: A comprehensive systematic review.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Pooled it
  2. Review
  3. Hyperimmunoglobulin syndromes: A review of HIGM, HIES, and HIDS.Journal of translational autoimmunity · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Pitfalls of genetic testing in a patient with IKBKG deficiency.Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Tropical medicine and infectious disease · 2023
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Eric P HansonDivision of Rheumatology, Joseph Stokes Jr Research Institute, Children's Hospital of Philadelphia, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Linda Monaco-Shawver
Laura A Solt
Lisa A Madge
Pinaki P Banerjee
Michael J May
Jordan S Orange
University of Pennsylvania · USChildren's Hospital of Philadelphia · USPhiladelphia University · US

Funding

IMMUNOBIOLOGY OF NORMAL AND NEOPLASTIC LYMPHOCYTEST32CA009140 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Malay Haldar, WARREN S PEAR · 1985 to 2026
$16.1M
Immune System Development and RegulationT32AI055428 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ALLMAN, DAVID M, OLIVER, PAULA MARIA · 2003 to 2025
$4.2M
IMMUNOREGULATION IN EXPERIMENTAL CHAGAS'DISEASER01AI022070 · NIAID · UNIVERSITY OF GEORGIA (UGA) · PI TARLETON, RICK L · 1985 to 2011
$3.2M
Non-Canonical NF-kappaB Signaling In Endothelial CellsR01HL080612 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MAY, MICHAEL J · 2006 to 2010
$2.0M
The mechanism of NK cell defects in human NEMO deficiencyR21AI079731 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI ORANGE, JORDAN SCOTT · 2008 to 2009
$439k
NCI NIH HHS 5T32 CA009140-33NCI NIH HHS T32 CA009140NHLBI NIH HHS HL080612NHLBI NIH HHS R01 HL080612NIAID NIH HHS AI079731NIAID NIH HHS N01 AI-22070NIAID NIH HHS R01 AI022070NIAID NIH HHS R21 AI079731NIAID NIH HHS T32 AI055428
6 · The paper itself

Abstract

backgroundHuman hypomorphic nuclear factor-kappaB essential modulator (NEMO) mutations cause diverse clinical and immunologic phenotypes, but understanding of their scope and mechanistic links to immune function and genotype is incomplete.

objectiveWe created and analyzed a database of hypomorphic NEMO mutations to determine the spectrum of phenotypes and their associated genotypes and sought to establish a standardized NEMO reconstitution system to obtain mechanistic insights.

methodsPhenotypes of 72 individuals with NEMO mutations were compiled. NEMO L153R and C417R were investigated further in a reconstitution system. TNF-alpha or Toll-like receptor (TLR)-5 signals were evaluated for nuclear factor-kappaB activation, programmed cell death, and A20 gene expression.

resultsThirty-two different mutations were identified; 53% affect the zinc finger domain. Seventy-seven percent were associated with ectodermal dysplasia, 86% with serious pyogenic infection, 39% with mycobacterial infection, 19% with serious viral infection, and 23% with inflammatory diseases. Thirty-six percent of individuals died at a mean age of 6.4 years. CD40, IL-1, TNF-alpha, TLR, and T-cell receptor signals were impaired in 15 of 16 (94%), 6 of 7 (86%), 9 of 11 (82%), 9 of 14 (64%), and 7 of 18 (39%), respectively. Hypomorphism-reconstituted NEMO-deficient cells demonstrated partial restoration of NEMO functions. Although both L153R and C417R impaired TLR and TNF-alpha-induced NF-kappaB activation, L153R also increased TNF-alpha-induced programmed cell death with decreased A20 expression.

conclusionDistinct NEMO hypomorphs define specific disease and genetic characteristics. A reconstitution system can identify attributes of hypomorphisms independent of an individual's genetic background. Apoptosis susceptibility in L153R reconstituted cells defines a specific phenotype of this mutation that likely contributes to the excessive inflammation with which it is clinically associated.

Indexed as

Databases, GeneticMutation, MissenseAmino Acid SubstitutionApoptosisCD40 AntigensDNA-Binding ProteinsGene Expression RegulationGenetic Complementation TestGenotypeHumansI-kappa B KinaseImmunologic Deficiency SyndromesIntracellular Signaling Peptides and ProteinsJurkat CellsNF-kappa BNuclear ProteinsCD40 AntigensDNA-Binding ProteinsI-kappa B KinaseIKBKG protein, humanIntracellular Signaling Peptides and ProteinsNF-kappa BNuclear ProteinsReceptors, Antigen, T-CellTLR5 protein, humanTNFAIP3 protein, humanToll-Like Receptor 5Tumor Necrosis Factor-alphaTumor Necrosis Factor alpha-Induced Protein 3

Identifiers

PMID18851874
PMCPMC2710968
OpenAlexW2125677345

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.