Evidence map›Paper›PMID 18850059›Full record

ArticleJournal of molecular evolution2008

Identification of a saxitoxin biosynthesis gene with a history of frequent horizontal gene transfers.

Ralf Kellmann, Troco Kaan Mihali, Troco Kaan Michali, Brett Anthony Neilan, Brett Adam Neilan

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 101 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Metabolomics Applied to Cyanobacterial Toxins and Natural Products.Advances in experimental medicine and biology · 2023
    Review
  6. Article
  7. Article
  8. Microorganisms · 2021
    Article
  9. Review
  10. From theFrontiers in microbiology · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Chemistry of a Unique Polyketide-like Synthase.Journal of the American Chemical Society · 2018
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
    Michali, Troco Kaan [corrected to Mihali, Troco Kaan]; Neilan, Brett Adam [corrected to Neilan, Brett Anthony]
5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ralf KellmannDepartment of Molecular Biology, University of Bergen, P.O. Box 7803, 5020, Bergen, Norway. ralf.kellmann@mbi.uib.no
Troco Kaan Mihali
Troco Kaan Michali
Brett Anthony Neilan
Brett Adam Neilan
UNSW Sydney · AUUniversity of Bergen · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The paralytic shellfish poisoning (PSP) toxins, saxitoxin, and its derivatives, are produced by a complex and unique biosynthetic pathway. It involves reactions that are rare in other metabolic pathways, however, distantly related organisms, such as dinoflagellates and cyanobacteria, produce these toxins by an identical pathway. Speculative explanations for the unusual phylogenetic distribution of this metabolic pathway have been proposed, including a polyphyletic origin, the involvement of symbiotic bacteria, and horizontal gene transfer. This study describes for the first time the identity of one gene, sxt1, that is involved in the biosynthesis of saxitoxin in cyanobacteria. It encoded an O-carbamoyltransferase (OCTASE) that was proposed to carbamoylate the hydroxymethyl side chain of saxitoxin precursor. Orthologues of sxt1 were exclusively present in PSP-toxic strains of cyanobacteria and had a high sequence similarity to each other. L. wollei had a naturally mutated sxt1 gene that encoded an inactive enzyme, and was incapable of producing carbamoylated PSP-toxin analogues, supporting the proposed function of Sxt1. Phylogenetic analysis revealed that OCATSE genes were present exclusively in prokaryotic organisms and were characterized by a high rate of horizontal gene transfer. OCTASE has most likely evolved from an ancestral O-sialoglycoprotein endopeptidase from proteobacteria, whereas the most likely phylogenetic origin of sxt1 was an ancestral alpha-proteobacterium. The phylogeny of sxt1 suggested that the entire set of genes required for saxitoxin biosynthesis may spread by horizontal gene transfer.

Indexed as

Evolution, MolecularGenes, BacterialGene Transfer, HorizontalAmino Acid SequenceAnimalsBacterial ProteinsCarboxyl and Carbamoyl TransferasesCyanobacteriaDatabases, GeneticGene Expression Regulation, BacterialMarine ToxinsMetabolic Networks and PathwaysMolecular Sequence DataPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16S3'-hydroxymethylcephem O-carbamoyltransferaseBacterial ProteinsCarboxyl and Carbamoyl TransferasesMarine ToxinsRNA, Ribosomal, 16SSaxitoxin

Identifiers

PMID18850059
OpenAlexW2122610798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.