Evidence map›Paper›PMID 18849347›Full record

ArticleHuman molecular genetics2009

BEST1 expression in the retinal pigment epithelium is modulated by OTX family members.

Noriko Esumi, Shu Kachi, Laszlo Hackler, Tomohiro Masuda, Zhiyong Yang, Peter A Campochiaro, Donald J Zack

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 67 citations in OpenAlex.

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  10. Exploring ocular fibulin-3 (EFEMP1): Anatomical, age-related, and species perspectives.Biochimica et biophysica acta. Molecular basis of disease · 2024
    Article
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  16. Article
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Noriko EsumiThe Guerrieri Center for Genetic Engineering and Molecular Ophthalmology at The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21287-9289, USA.
Shu Kachi
Laszlo Hackler
Tomohiro Masuda
Zhiyong Yang
Peter A Campochiaro
Donald J Zack
Johns Hopkins University · US

Funding

Wilmer Core Grant for Vision ResearchP30EY001765 · NEI · JOHNS HOPKINS UNIVERSITY · PI Jiang Qian · 1985 to 2026
$22.1M
Molecular Mechanisms Regulating VMD2 ExpressionR01EY016398 · NEI · JOHNS HOPKINS UNIVERSITY · PI ESUMI, NORIKO · 2006 to 2009
$643k
ChIP-ChIP-Chip: A New Tool To Study RPE Gene RegulationR03EY015410 · NEI · JOHNS HOPKINS UNIVERSITY · PI ESUMI, NORIKO · 2005 to 2007
$481k
NEI NIH HHS EY001765NEI NIH HHS EY015401NEI NIH HHS EY016398NEI NIH HHS R01 EY016398NEI NIH HHS R03 EY015410
6 · The paper itself

Abstract

A number of genes preferentially expressed in the retinal pigment epithelium (RPE) are associated with retinal degenerative disease. One of these, BEST1, encodes bestrophin-1, a protein that when mutated causes Best macular dystrophy. As a model for RPE gene regulation, we have been studying the mechanisms that control BEST1 expression, and recently demonstrated that members of the MITF-TFE family modulate BEST1 transcription. The human BEST1 upstream region from -154 to +38 bp is sufficient to direct expression in the RPE, and positive-regulatory elements exist between -154 and -104 bp. Here, we show that the -154 to -104 bp region is necessary for RPE expression in transgenic mice and contains a predicted OTX-binding site (Site 1). Since another non-canonical OTX site (Site 2) is located nearby, we tested the function of these sites using BEST1 promoter/luciferase constructs by in vivo electroporation and found that mutation of both sites reduces promoter activity. Three OTX family proteins - OTX1, OTX2 and CRX - bound to both Sites 1 and 2 in vitro, and all of them increased BEST1 promoter activity. Surprisingly, we found that human and bovine RPE expressed not only OTX2 but also CRX, the CRX genomic region in bovine RPE was hypersensitive to DNase I, consistent with active transcription, and that both OTX2 and CRX bound to the BEST1 proximal promoter in vivo. These results demonstrate for the first time CRX expression in the RPE, and suggest that OTX2 and CRX may act as positive modulators of the BEST1 promoter in the RPE.

Indexed as

Gene Expression RegulationAnimalsBestrophinsBinding SitesCattleCell LineChloride ChannelsCorneal Dystrophies, HereditaryEye ProteinsGenes, ReporterHomeodomain ProteinsHumansMiceMice, TransgenicMultigene FamilyOtx Transcription FactorsBEST1 protein, humanBestrophinsChloride Channelscone rod homeobox proteinEye ProteinsHomeodomain ProteinsOTX1 protein, humanOTX2 protein, humanOtx Transcription FactorsTrans-Activators

Identifiers

PMID18849347
PMCPMC2605189
OpenAlexW2096752796

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.