Evidence map›Paper›PMID 18846088›Full record

ReviewNature biotechnology2008

The potential and challenges of nanopore sequencing.

Daniel Branton, David W Deamer, Andre Marziali, Hagan Bayley, Steven A Benner, Thomas Butler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang and 15 more

Abstract readReview
In one paragraph

Review in Nature biotechnology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 801 papers.

0numbers the graph read from it
0cells of the map it votes in
801citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

801 citing papers in PubMed.

  1. Nanopore Sequencing for Chikungunya Virus: Principles and Application.Methods in molecular biology (Clifton, N.J.) · 2027
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Generative design of programmable asymmetric β-barrel nanopores.bioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Nanopore event detection in a simple and adaptive way.bioRxiv : the preprint server for biology · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

741 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Daniel BrantonDepartment of Molecular and Cell Biology, Harvard University, Cambridge, Massachusetts 02138, USA. dbranton@harvard.edu
David W Deamer
Andre Marziali
Hagan Bayley
Steven A Benner
Thomas Butler
Massimiliano Di Ventra
Slaven Garaj
Andrew Hibbs
Xiaohua Huang
Stevan B Jovanovich
Predrag S Krstic
Stuart Lindsay
Xinsheng Sean Ling
Carlos H Mastrangelo
Amit Meller
John S Oliver
Yuriy V Pershin
J Michael Ramsey
Robert Riehn
Gautam V Soni
Vincent Tabard-Cossa
Meni Wanunu
Matthew Wiggin
Jeffery A Schloss

Funding

Electronic Sequencing in NanoporesR01HG003703 · NHGRI · HARVARD UNIVERSITY · PI BRANTON, DANIEL NONE, GOLOVCHENKO, JENE A · 2005 to 2014
$16.1M
Microbead INtegrated DNA Sequencer (MINDS) SystemR01HG003583 · NHGRI · MICROCHIP BIOTECHNOLOGIES, INC. · PI JOVANOVICH, STEVAN B · 2004 to 2007
$6.1M
DNA transport and sequencing through a quadrupole gateR21HG004764 · NHGRI · UT-BATTELLE, LLC-OAK RIDGE NATIONAL LAB · PI KRSTIC, PREDRAG S. · 2008 to 2009
$1.0M
Sequencing DNA by transverse electrical measurements in NanochannelsR21HG004383 · NHGRI · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI RIEHN, ROBERT · 2007 to 2009
$541k
NHGRI NIH HHS R01 HG003583NHGRI NIH HHS R01 HG003703NHGRI NIH HHS R21 HG004383NHGRI NIH HHS R21 HG004764
6 · The paper itself

Abstract

A nanopore-based device provides single-molecule detection and analytical capabilities that are achieved by electrophoretically driving molecules in solution through a nano-scale pore. The nanopore provides a highly confined space within which single nucleic acid polymers can be analyzed at high throughput by one of a variety of means, and the perfect processivity that can be enforced in a narrow pore ensures that the native order of the nucleobases in a polynucleotide is reflected in the sequence of signals that is detected. Kilobase length polymers (single-stranded genomic DNA or RNA) or small molecules (e.g., nucleosides) can be identified and characterized without amplification or labeling, a unique analytical capability that makes inexpensive, rapid DNA sequencing a possibility. Further research and development to overcome current challenges to nanopore identification of each successive nucleotide in a DNA strand offers the prospect of 'third generation' instruments that will sequence a diploid mammalian genome for approximately $1,000 in approximately 24 h.

Indexed as

ForecastingChromosome MappingDNAGenomicsNanostructuresNanotechnologySequence AlignmentSequence Analysis, DNADNA

Identifiers

PMID18846088
PMCPMC2683588

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.