Evidence map›Paper›PMID 18845844›Full record

ArticleGenetics2008

A yeast sir2 mutant temperature sensitive for silencing.

Chia-Lin Wang, Joseph Landry, Rolf Sternglanz

Open access · greenAbstract read
In one paragraph

Article in Genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Chia-Lin WangDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York 11794-5215, USA.
Joseph Landry
Rolf Sternglanz
Stony Brook University · US

Funding

PROTEINS AND ENZYMES AFFECTING CHROMATINR01GM028220 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 1985 to 2006
$2.4M
Proteins and Enzymes Affecting ChromatinR56GM028220 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI STERNGLANZ, ROLF · 2007 to 2007
$387k
NIGMS NIH HHS GM28220NIGMS NIH HHS R01 GM028220NIGMS NIH HHS R56 GM028220
6 · The paper itself

Abstract

A screen for Saccharomyces cerevisiae temperature-sensitive silencing mutants identified a strain with a point mutation in the SIR2 gene. The mutation changed Ser276 to Cys. This amino acid is in the highly conserved NAD(+) binding pocket of the Sir2 family of proteins. Haploid strains of either mating type carrying the mutation were severely defective at mating at 37 degrees but normal at 25 degrees . Measurements of RNA from the HMR locus demonstrated that silencing was lost rapidly upon shifting the mutant from the low to the high temperature, but it took >8 hours to reestablish silencing after a shift back to 25 degrees . Silencing at the rDNA locus was also temperature sensitive. On the other hand, telomeric silencing was totally defective at both temperatures. Enzymatic activity of the recombinant wild-type and mutant Sir2 protein was compared by three different assays. The mutant exhibited less deacetylase activity than the wild-type protein at both 37 degrees and 25 degrees . Interestingly, the mutant had much more NAD(+)-nicotinamide exchange activity than wild type, as did a mutation in the same region of the protein in the Sir2 homolog, Hst2. Thus, mutations in this region of the NAD(+) binding pocket of the protein are able to carry out cleavage of NAD(+) to nicotinamide but are defective at the subsequent deacetylation step of the reaction.

Indexed as

Gene SilencingPoint MutationTemperatureBinding SitesCatalytic DomainDNA, FungalDNA, RibosomalHistone DeacetylasesSaccharomyces cerevisiaeSilent Information Regulator Proteins, Saccharomyces cerevisiaeSirtuin 2SirtuinsDNA, FungalDNA, RibosomalHistone DeacetylasesSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR2 protein, S cerevisiaeSirtuin 2Sirtuins

Identifiers

PMID18845844
PMCPMC2600934
OpenAlexW2153713788

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.