Evidence map›Paper›PMID 18845488›Full record

ArticleClinical immunology (Orlando, Fla.)2009

Can oligomeric T-cell receptor be used as a tool to detect viral peptide epitopes on infected cells?

Nadia Anikeeva, Tatiana Mareeva, Wei Liu, Yuri Sykulev

Open access · greenAbstract read
In one paragraph

Article in Clinical immunology (Orlando, Fla.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nadia AnikeevaDepartment of Microbiology and Immunology and Kimmel Cancer Center, BLSB 650, Thomas Jefferson University, Philadelphia, PA 19107, USA.
Tatiana Mareeva
Wei Liu
Yuri Sykulev
Thomas Jefferson University · USSidney Kimmel Cancer Center · US

Funding

X-Ray Crystallography and Macromolecular CharacterizationP30CA056036 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL P SILVER · 1995 to 2026
$94.8M
Immune receptors on Cytotoxic Lymphocytes&Target CellR01AI052812 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI SYKULEV, YURI · 2002 to 2012
$3.5M
Soluble oligomeric TCR and antigen presentation to CTLR21AI058755 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI SYKULEV, YURI · 2004 to 2005
$445k
Immune Receptors on Cytotoxic Lymphocytes and Target CellsR56AI052812 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI SYKULEV, YURI · 2007 to 2007
$412k
NRSA TRAINING PROGRAM FOR AIDS RESEARCHT32AI007523 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI SRINIVASAN, ALAGARSAMY · 1997 to 2001
$303k
NCI NIH HHS CA56036-08NCI NIH HHS P30 CA056036NIAID NIH HHS 5-T32-AI05723NIAID NIH HHS AI052812NIAID NIH HHS AI058755NIAID NIH HHS R01 AI052812NIAID NIH HHS R21 AI058755NIAID NIH HHS R56 AI052812NIAID NIH HHS T32 AI007523
6 · The paper itself

Abstract

We have utilized soluble HIV Gag-specific T-cell receptor (TCR) D3 with low affinity and TCR-like antibody 25-D1.16 recognizing its natural peptide-MHC (pMHC) ligand with high affinity to determine how affinity and off-rate of the receptor-pMHC interactions affect the sensitivity of pMHC detection on the cell surface. We found that with soluble TCR cognate pMHCs can be detected only at relatively high cell surface densities when the TCR was oligomerized using either Streptavidin or quantum dot (QD) scaffolds. While the higher affinity probe led to a greater sensitivity of pMHC detection, monomers and oligomers of the probe showed essentially the same detection limit, which is restricted by the sensitivity of standard flow cytometry technique. We have also shown that imaging of QD/TCR specifically bound to cognate pMHC on the cell surface yielded a very bright fluorescent signal that can enhance the sensitivity of viral peptide detection on infected cells.

Indexed as

AnimalsAntibody SpecificityCell LineDrosophila melanogasterEpitopesHistocompatibility Antigens Class IIImmunoglobulin Fab FragmentsPeptidesReceptors, Antigen, T-CellSolutionsViral ProteinsEpitopesHistocompatibility Antigens Class IIImmunoglobulin Fab FragmentsPeptidesReceptors, Antigen, T-CellSolutionsViral Proteins

Identifiers

PMID18845488
PMCPMC2632680
OpenAlexW2118319010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.