ArticleBMC plant biology2008
Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome.
Article in BMC plant biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges.Current research in food science · 2023Review
- Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.Scientific data · 2018Article
- Whole Genome Resequencing of Capsicum baccatum and Capsicum annuum to Discover Single Nucleotide Polymorphism Related to Powdery Mildew Resistance.Scientific reports · 2018Article
- Next-Generation Sequencing Approaches in Genome-Wide Discovery of Single Nucleotide Polymorphism Markers Associated with Pungency and Disease Resistance in Pepper.BioMed research international · 2018Review
- Cloning and expression analysis of a new anther-specific gene CaMF4 in Capsicum annuum.Journal of genetics · 2017Article
- Fine mapping of Restorer-of-fertility in pepper (Capsicum annuum L.) identified a candidate gene encoding a pentatricopeptide repeat (PPR)-containing protein.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Genome-wide analysis of Dof transcription factors reveals functional characteristics during development and response to biotic stresses in pepper.Scientific reports · 2016Article
- Bioinformatics resources for pollen.Plant reproduction · 2016Review
- Expressed Sequence Tags Analysis and Design of Simple Sequence Repeats Markers from a Full-Length cDNA Library in Perilla frutescens (L.).International journal of genomics · 2015Article
- Dynamics of the chili pepper transcriptome during fruit development.BMC genomics · 2014Article
- Conserved changes in the dynamics of metabolic processes during fruit development and ripening across species.Plant physiology · 2014Article
- De novo transcriptome assembly and novel microsatellite marker information in Capsicum annuum varieties Saengryeg 211 and Saengryeg 213.Botanical studies · 2013Article
- A pepper (Capsicum annuum L.) metacaspase 9 (Camc9) plays a role in pathogen-induced cell death in plants.Molecular plant pathology · 2013Article
- Multiple classes of immune-related proteases associated with the cell death response in pepper plants.PloS one · 2013Article
- Article
- Isolation and characterization of CaMF3, an anther-specific gene in Capsicum annuum L.Genetics and molecular biology · 2012Article
- Transcriptome profiling and molecular marker discovery in red pepper, Capsicum annuum L. TF68.Molecular biology reports · 2012Article
- The capsicum transcriptome DB: a "hot" tool for genomic research.Bioinformation · 2012Article
- Advances in omics and bioinformatics tools for systems analyses of plant functions.Plant & cell physiology · 2011Review
- Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome.Plant cell reports · 2011Article
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Authors and funding
9 authors.
Funding
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Abstract
backgroundThere is no dedicated database available for Expressed Sequence Tags (EST) of the chili pepper (Capsicum annuum), although the interest in a chili pepper EST database is increasing internationally due to the nutritional, economic, and pharmaceutical value of the plant. Recent advances in high-throughput sequencing of the ESTs of chili pepper cv. Bukang have produced hundreds of thousands of complementary DNA (cDNA) sequences. Therefore, a chili pepper EST database was designed and constructed to enable comprehensive analysis of chili pepper gene expression in response to biotic and abiotic stresses.
resultsWe built the Pepper EST database to mine the complexity of chili pepper ESTs. The database was built on 122,582 sequenced ESTs and 116,412 refined ESTs from 21 pepper EST libraries. The ESTs were clustered and assembled into virtual consensus cDNAs and the cDNAs were assigned to metabolic pathway, Gene Ontology (GO), and MIPS Functional Catalogue (FunCat). The Pepper EST database is designed to provide a workbench for (i) identifying unigenes in pepper plants, (ii) analyzing expression patterns in different developmental tissues and under conditions of stress, and (iii) comparing the ESTs with those of other members of the Solanaceae family. The Pepper EST database is freely available at http://genepool.kribb.re.kr/pepper/.
conclusionThe Pepper EST database is expected to provide a high-quality resource, which will contribute to gaining a systemic understanding of plant diseases and facilitate genetics-based population studies. The database is also expected to contribute to analysis of gene synteny as part of the chili pepper sequencing project by mapping ESTs to the genome.
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