Evidence map›Paper›PMID 18843044›Full record

ArticleMolecular biology of the cell2008

SNARE function is not involved in early endosome docking.

Ulf Geumann, Sina Victoria Barysch, Peer Hoopmann, Reinhard Jahn, Silvio O Rizzoli

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Probing and manipulating intracellular membrane traffic by microinjection of artificial vesicles.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  5. Article
  6. Calcium sensitive ring-like oligomers formed by synaptotagmin.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  7. Review
  8. Article
  9. Article
  10. Pannexin 1 ohnologs in the teleost lineage.The Journal of membrane biology · 2012
    Article
  11. Cell-free fusion of bacteria-containing phagosomes with endocytic compartments.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  12. An update on transport vesicle tethering.Molecular membrane biology · 2010
    Review
  13. Article
  14. Organelle docking: R-SNAREs are late.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  15. Minimal membrane docking requirements revealed by reconstitution of Rab GTPase-dependent membrane fusion from purified components.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  16. Sorting in early endosomes reveals connections to docking- and fusion-associated factors.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ulf GeumannDepartment of Neurobiology, Max Planck Institute for Biophysical Chemistry, Göttingen 37077, Germany.
Sina Victoria Barysch
Peer Hoopmann
Reinhard Jahn
Silvio O Rizzoli
Max Planck Institute for Biophysical Chemistry · DEEuropean Neuroscience Institute Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Docking and fusion of transport vesicles constitute elementary steps in intracellular membrane traffic. While docking is thought to be initiated by Rab-effector complexes, fusion is mediated by SNARE (N-ethylmaleimide-sensitive factor [NSF] attachment receptor) proteins. However, it has been recently debated whether SNAREs also play a role in the establishment or maintenance of a stably docked state. To address this question, we have investigated the SNARE dependence of docking and fusion of early endosomes, one of the central sorting compartments in the endocytic pathway. A new, fluorescence-based in vitro assay was developed, which allowed us to investigate fusion and docking in parallel. Similar to homotypic fusion, docking of early endosomes is dependent on the presence of ATP and requires physiological temperatures. Unlike fusion, docking is insensitive to the perturbation of SNARE function by means of soluble SNARE motifs, SNARE-specific F(ab) fragments, or by a block of NSF activity. In contrast, as expected, docking is strongly reduced by interfering with the synthesis of phosphatidyl inositol (PI)-3 phosphate, with the function of Rab-GTPases, as well as with early endosomal autoantigen 1 (EEA1), an essential tethering factor. We conclude that docking of early endosomes is independent of SNARE function.

Indexed as

AnimalsBiomarkersEndocytosisEndosomesGuanosine 5'-O-(3-Thiotriphosphate)Membrane FusionPC12 Cellsrab5 GTP-Binding Proteinsrab GTP-Binding ProteinsRatsSNARE ProteinsTransport VesiclesVesicular Transport ProteinsBiomarkersGuanosine 5'-O-(3-Thiotriphosphate)rab5 GTP-Binding Proteinsrab GTP-Binding ProteinsSNARE ProteinsVesicular Transport Proteins

Identifiers

PMID18843044
PMCPMC2592678
OpenAlexW2017789763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.