Evidence map›Paper›PMID 18842635›Full record

ArticleNucleic acids research2009

RAPID: Resource of Asian Primary Immunodeficiency Diseases.

Shivakumar Keerthikumar, Rajesh Raju, Kumaran Kandasamy, Atsushi Hijikata, Subhashri Ramabadran, Lavanya Balakrishnan, Mukhtar Ahmed, Sandhya Rani, Lakshmi Dhevi N Selvan, Devi S Somanathan and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Trial
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  3. Review
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  5. Article
  6. Article
  7. Review
  8. Gene mutations responsible for primary immunodeficiency disorders: A report from the first primary immunodeficiency biobank in Iran.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Primary Immune Deficiency Treatment Consortium (PIDTC) report.The Journal of allergy and clinical immunology · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. The RIKEN integrated database of mammals.Nucleic acids research · 2011
    Article
  19. Mutation@A Glance: an integrative web application for analysing mutations from human genetic diseases.DNA research : an international journal for rapid publication of reports on genes and genomes · 2010
    Article
  20. Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach.DNA research : an international journal for rapid publication of reports on genes and genomes · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 3 countries.

Shivakumar KeerthikumarInstitute of Bioinformatics, International Technology Park, Bangalore 560 066, India.
Rajesh Raju
Kumaran Kandasamy
Atsushi Hijikata
Subhashri Ramabadran
Lavanya Balakrishnan
Mukhtar Ahmed
Sandhya Rani
Lakshmi Dhevi N Selvan
Devi S Somanathan
Somak Ray
Mitali Bhattacharjee
Sashikanth Gollapudi
Y L Ramachandra
Sahely Bhadra
Chiranjib Bhattacharyya
Kohsuke Imai
Shigeaki Nonoyama
Hirokazu Kanegane
Toshio Miyawaki
Akhilesh Pandey
Osamu Ohara
Sujatha Mohan
Kuvempu University · INKazusa DNA Research Institute · JPInstitute of Bioinformatics · INJohns Hopkins University · USRIKEN Center for Integrative Medical Sciences · JPUniversity of Toyama · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Availability of a freely accessible, dynamic and integrated database for primary immunodeficiency diseases (PID) is important both for researchers as well as clinicians. To build a PID informational platform and also as a part of action to initiate a network of PID research in Asia, we have constructed a web-based compendium of molecular alterations in PID, named Resource of Asian Primary Immunodeficiency Diseases (RAPID), which is available as a worldwide web resource at http://rapid.rcai.riken.jp/. It hosts information on sequence variations and expression at the mRNA and protein levels of all genes reported to be involved in PID patients. The main objective of this database is to provide detailed information pertaining to genes and proteins involved in primary immunodeficiency diseases along with other relevant information about protein-protein interactions, mouse studies and microarray gene-expression profiles in various organs and cells of the immune system. RAPID also hosts a tool, mutation viewer, to predict deleterious and novel mutations and also to obtain mutation-based 3D structures for PID genes. Thus, information contained in this database should help physicians and other biomedical investigators to further investigate the role of these molecules in PID.

Indexed as

Databases, GeneticAnimalsAsiaGene Expression ProfilingHumansImmunologic Deficiency SyndromesMiceMutationProteinsRNA, MessengerProteinsRNA, Messenger

Identifiers

PMID18842635
PMCPMC2686530
OpenAlexW2132162461

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.