ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2008
Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly.
Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- PhaseDancer: a novel targeted assembler of segmental duplications unravels the complexity of the human chromosome 2 fusion going from 48 to 46 chromosomes in hominin evolution.Genome biology · 2023Article
- Molecular Cytogenetic Analysis of One African and Five Asian Macaque Species Reveals Identical Karyotypes as in Mandrill.Current genomics · 2018Article
- Reconstruction and evolutionary history of eutherian chromosomes.Proceedings of the National Academy of Sciences of the United States of America · 2017Article
- Centromere Destiny in Dicentric Chromosomes: New Insights from the Evolution of Human Chromosome 2 Ancestral Centromeric Region.Molecular biology and evolution · 2017Article
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- Identifying rhesus macaque gene orthologs using heterospecific human CNV probes.Genomics data · 2015Article
- A new rhesus macaque assembly and annotation for next-generation sequencing analyses.Biology direct · 2014Article
- Hominoid fission of chromosome 14/15 and the role of segmental duplications.Genome research · 2013Article
- Improving genome assemblies and annotations for nonhuman primates.ILAR journal · 2013Review
- Article
- The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.Genome research · 2012Article
- Limitations of the rhesus macaque draft genome assembly and annotation.BMC genomics · 2012Article
- Refinement of Bos taurus sequence assembly based on BAC-FISH experiments.BMC genomics · 2011Article
- The genome diversity and karyotype evolution of mammals.Molecular cytogenetics · 2011Article
- Analysis of recent segmental duplications in the bovine genome.BMC genomics · 2009Article
- A satellite-like sequence, representing a "clone gap" in the human genome, was likely involved in the seeding of a novel centromere in macaque.Chromosoma · 2009Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have compared the synteny block organization of the official macaque genome sequence assembly (Jan. 2006; rheMac2) with an independent assembly that used a molecular cytogenetic approach. The mapping of four synteny segments, ranging in size from 4 Mb to 24 Mb, was found to be inconsistent between the two datasets. We specifically investigated these discrepancies by appropriate co-hybridization FISH experiments with validated reference probes located outside the area under study. We found that in the macaque rheMac2 release three synteny segments were wrongly mapped and one segment was incorrectly oriented.
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