Evidence map›Paper›PMID 18836040›Full record

ArticleThe Plant cell2008

IMPa-4, an Arabidopsis importin alpha isoform, is preferentially involved in agrobacterium-mediated plant transformation.

Saikat Bhattacharjee, Lan-Ying Lee, Heiko Oltmanns, Hongbin Cao, Veena, Joshua Cuperus, Stanton B Gelvin

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. An Arabidopsis nonhost resistance gene,Current research in microbial sciences · 2022
    Article
  11. Review
  12. Article
  13. Review
  14. Frontiers in plant science · 2021
    Article
  15. Article
  16. Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
  18. International journal of molecular sciences · 2020
    Article
  19. Biodesign research · 2020
    Review
  20. Frontiers in plant science · 2020
    Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Saikat BhattacharjeeDepartment of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.
Lan-Ying Lee
Heiko Oltmanns
Hongbin Cao
Veena
Joshua Cuperus
Stanton B Gelvin
Purdue University West Lafayette · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Successful transformation of plants by Agrobacterium tumefaciens requires that the bacterial T-complex actively escorts T-DNA into the host's nucleus. VirD2 and VirE2 are virulence proteins on the T-complex that have plant-functional nuclear localization signal sequences that may recruit importin alpha proteins of the plant for nuclear import. In this study, we evaluated the involvement of seven of the nine members of the Arabidopsis thaliana importin alpha family in Agrobacterium transformation. Yeast two-hybrid, plant bimolecular fluorescence complementation, and in vitro protein-protein interaction assays demonstrated that all tested Arabidopsis importin alpha members can interact with VirD2 and VirE2. However, only disruption of the importin IMPa-4 inhibited transformation and produced the rat (resistant to Agrobacterium transformation) phenotype. Overexpression of six importin alpha members, including IMPa-4, rescued the rat phenotype in the impa-4 mutant background. Roots of wild-type and impa-4 Arabidopsis plants expressing yellow fluorescent protein-VirD2 displayed nuclear localization of the fusion protein, indicating that nuclear import of VirD2 is not affected in the impa-4 mutant. Somewhat surprisingly, VirE2-yellow fluorescent protein mainly localized to the cytoplasm of both wild-type and impa-4 Arabidopsis cells and to the cytoplasm of wild-type tobacco (Nicotiana tabacum) cells. However, bimolecular fluorescence complementation assays indicated that VirE2 could localize to the nucleus when IMPa-4, but not when IMPa-1, was overexpressed.

Indexed as

Transformation, GeneticArabidopsisArabidopsis ProteinsBacterial ProteinsGenetic Complementation TestKaryopherinsMutationPhenotypeProtein Interaction MappingProtein IsoformsProtein Sorting SignalsProtein TransportRhizobiumRNA InterferenceRNA, MessengerTwo-Hybrid System TechniquesArabidopsis ProteinsBacterial Proteinsimportin alpha, ArabidopsisKaryopherinsProtein IsoformsProtein Sorting SignalsRNA, MessengerVirulence Factors

Identifiers

PMID18836040
PMCPMC2590722
OpenAlexW2116954869

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.