Evidence map›Paper›PMID 18835935›Full record

ArticleDiabetes2009

Genome-wide linkage scan in Gullah-speaking African American families with type 2 diabetes: the Sea Islands Genetic African American Registry (Project SuGAR).

Michèle M Sale, Lingyi Lu, Ida J Spruill, Jyotika K Fernandes, Kerry H Lok, Jasmin Divers, Carl D Langefeld, W Timothy Garvey

Abstract read
In one paragraph

Article in Diabetes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Genetic landscape of Gullah African Americans.American journal of physical anthropology · 2021
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Successes, Challenges and Lessons Learned: Community-engaged research with South Carolina's Gullah population.Gateways : international journal of community research & engagement · 2013
    Article
  9. Article
  10. Article
  11. Article
  12. Pleiotropy of type 2 diabetes with obesity.Journal of human genetics · 2011
    Article
  13. Article
  14. Ordered subset analysis identifies loci influencing lung cancer risk on chromosomes 6q and 12q.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2010
    Article
  15. Article
  16. Article
  17. Article
  18. Oral health knowledge and behavior among adults with diabetes.Diabetes research and clinical practice · 2009
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Michèle M SaleCenter for Public Health Genomics, University of Virginia, Charlottesville, Virginia, USA. msale@virginia.edu
Lingyi Lu
Ida J Spruill
Jyotika K Fernandes
Kerry H Lok
Jasmin Divers
Carl D Langefeld
W Timothy Garvey

Funding

WORKER PROTECTION AGAINST AIRBORNE INFLUENZA - A PILOT STUDYM01RR007122 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HUNDLEY, WILLIAM GREGORY · 1992 to 2010
$35.2M
Why is the prevalence of obesity so high in U.S. Southern States? Regional predictors of BMI and obesity treatment response.P30DK056336 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI James O Hill · 2000 to 2026
$31.9M
THE ROLE OF THE RNA BINDING PROTEIN LA IN ORAL TUMOR BIOLOGYP20RR017696 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KIRKWOOD, KEITH L · 2002 to 2011
$20.7M
ZINC AND COPPER METABOLISM IN COLLAGEN DISORDERSM01RR001070 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI REVES, JOSEPH G · 1985 to 2009
$16.3M
Genetics of African American Type 2 DiabetesR01DK066358 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NG, MAGGIE · 2003 to 2019
$6.2M
GENOTYPING FOR LOCATING HUMAN DISEASE GENESN01HG065403 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID L · 1996 to 2000
$1.7M
GENETIC MARKERS FOR NIDDM &PATHOGENIC METABOLIC TRAITSR01DK047461 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI GARVEY, W TIMOTHY · 1993 to 1997
–
NCRR NIH HHS M01 RR001070NCRR NIH HHS M01 RR007122NCRR NIH HHS M01-RR-1070NCRR NIH HHS P20 RR017696NCRR NIH HHS P20-RR-17696NHGRI NIH HHS N01 HG065403NIDDK NIH HHS DK-66358NIDDK NIH HHS P30 DK056336NIDDK NIH HHS P30-DK-56336NIDDK NIH HHS R01 DK047461NIDDK NIH HHS R01 DK066358
6 · The paper itself

Abstract

objectiveThe Gullah-speaking African American population from the Sea Islands of South Carolina is characterized by a low degree of European admixture and high rates of type 2 diabetes and diabetic complications. Affected relative pairs with type 2 diabetes were recruited through the Sea Islands Genetic African American Registry (Project SuGAR). RESEARCH DESIGN AND

methodsWe conducted a genome-wide linkage scan, genotyping 5,974 single nucleotide polymorphisms in 471 affected subjects and 50 unaffected relatives from 197 pedigrees. Data were analyzed using a multipoint engine for rapid likelihood inference and ordered subsets analyses (OSAs) for age at type 2 diabetes diagnosis, waist circumference, waist-to-hip ratio, and BMI. We searched for heterogeneity and interactions using a conditional logistic regression likelihood approach.

resultsLinkage peaks on chromosome 14 at 123-124 cM were detected for type 2 diabetes (logarithm of odds [LOD] 2.10) and for the subset with later age at type 2 diabetes diagnosis (maximum LOD 4.05). Two linkage peaks on chromosome 7 were detected at 44-45 cM for type 2 diabetes (LOD 1.18) and at 78 cM for type 2 diabetes (LOD 1.64) and the subset with earlier age at type 2 diabetes diagnosis (maximum LOD 3.93). The chromosome 14 locus and a peak on 7p at 29.5 cM were identified as important in the multilocus model. Other regions that provided modest evidence for linkage included chromosome 1 at 167.5 cM (LOD 1.51) and chromosome 3 at 121.0 cM (LOD 1.61).

conclusionsThis study revealed a novel type 2 diabetes locus in an African American population on 14q that appears to reduce age of disease onset and confirmed two loci on chromosome 7.

Indexed as

Black or African AmericanChromosome MappingChromosomes, Human, Pair 3Chromosomes, Human, Pair 7Diabetes Mellitus, Type 2Family HealthGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansLod ScorePolymorphism, Single NucleotideRegistriesSouth Carolina

Identifiers

PMID18835935
PMCPMC2606883

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.