Evidence map›Paper›PMID 18835900›Full record

ArticleBiophysical journal2008

Effect of profilin on actin critical concentration: a theoretical analysis.

Elena G Yarmola, Dmitri A Dranishnikov, Michael R Bubb

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. ATP-dependent actin barbed-end fluctuations at steady state.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Article
  4. Actin Turnover in Lamellipodial Fragments.Current biology : CB · 2017
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors.

Elena G YarmolaNorth Florida/South Georgia Veterans Health System, Research Service, Gainesville, Florida 32610, USA. yarmola@ufl.edu
Dmitri A Dranishnikov
Michael R Bubb

Funding

The mechanism of immunosuppression by thymosin beta 4.K25AR048918 · NIAMS · UNIVERSITY OF FLORIDA · PI YARMOLA, ELENA GEORGINA · 2003 to 2007
$492k
NIAMS NIH HHS 5K25AR048918NIAMS NIH HHS K25 AR048918
6 · The paper itself

Abstract

To explain the effect of profilin on actin critical concentration in a manner consistent with thermodynamic constraints and available experimental data, we built a thermodynamically rigorous model of actin steady-state dynamics in the presence of profilin. We analyzed previously published mechanisms theoretically and experimentally and, based on our analysis, suggest a new explanation for the effect of profilin. It is based on a general principle of indirect energy coupling. The fluctuation-based process of exchange diffusion indirectly couples the energy of ATP hydrolysis to actin polymerization. Profilin modulates this coupling, producing two basic effects. The first is based on the acceleration of exchange diffusion by profilin, which indicates, paradoxically, that a faster rate of actin depolymerization promotes net polymerization. The second is an affinity-based mechanism similar to the one suggested in 1993 by Pantaloni and Carlier although based on indirect rather than direct energy coupling. In the model by Pantaloni and Carlier, transformation of chemical energy of ATP hydrolysis into polymerization energy is regulated by direct association of each step in the hydrolysis reaction with a corresponding step in polymerization. Thus, hydrolysis becomes a time-limiting step in actin polymerization. In contrast, indirect coupling allows ATP hydrolysis to lag behind actin polymerization, consistent with experimental results.

Indexed as

Models, BiologicalActin CytoskeletonActinsAdenosine DiphosphateAdenosine TriphosphateAnimalsDiffusionDose-Response Relationship, DrugHumansHydrolysisPhosphatesProfilinsProtein BindingProtein MultimerizationProtein Structure, QuaternaryRabbitsActinsAdenosine DiphosphateAdenosine TriphosphatePhosphatesProfilins

Identifiers

PMID18835900
PMCPMC2599847

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.