Evidence map›Paper›PMID 18835896›Full record

ArticleBiophysical journal2008

High accuracy 3D quantum dot tracking with multifocal plane microscopy for the study of fast intracellular dynamics in live cells.

Sripad Ram, Prashant Prabhat, Jerry Chao, E Sally Ward, Raimund J Ober

Abstract read
In one paragraph

Article in Biophysical journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed.

  1. Single-Molecule 3D Nanoscopy for Application to Cryofixed Samples.The journal of physical chemistry. B · 2025
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  9. Single-molecule imaging in the primary cilium.Methods in cell biology · 2023
    Article
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  19. Review
  20. Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sripad RamDepartment of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Prashant Prabhat
Jerry Chao
E Sally Ward
Raimund J Ober

Funding

STRUCTURE/FUNCTION STUDIES OF HUMAN FCRNR01AI039167 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI WARD, ELIZABETH SALLY · 1995 to 2008
$2.8M
High accuracy quantum dot tracking in live cellsR01GM085575 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI OBER, RAIMUND J · 2008 to 2016
$2.5M
Quantitative Aspects of Single Molecule DetectionR01GM071048 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI OBER, RAIMUND J · 2005 to 2008
$1.0M
NIAID NIH HHS R01 AI039167NIGMS NIH HHS R01 GM071048NIGMS NIH HHS R01 GM085575
6 · The paper itself

Abstract

Single particle tracking in three dimensions in a live cell environment holds the promise of revealing important new biological insights. However, conventional microscopy-based imaging techniques are not well suited for fast three-dimensional (3D) tracking of single particles in cells. Previously we developed an imaging modality multifocal plane microscopy (MUM) to image fast intracellular dynamics in three dimensions in live cells. Here, we introduce an algorithm, the MUM localization algorithm (MUMLA), to determine the 3D position of a point source that is imaged using MUM. We validate MUMLA through simulated and experimental data and show that the 3D position of quantum dots can be determined over a wide spatial range. We demonstrate that MUMLA indeed provides the best possible accuracy with which the 3D position can be determined. Our analysis shows that MUM overcomes the poor depth discrimination of the conventional microscope, and thereby paves the way for high accuracy tracking of nanoparticles in a live cell environment. Here, using MUM and MUMLA we report for the first time the full 3D trajectories of QD-labeled antibody molecules undergoing endocytosis in live cells from the plasma membrane to the sorting endosome deep inside the cell.

Indexed as

Quantum DotsAlgorithmsAntibodiesCell LineCell MembraneCell SurvivalEndocytosisEndosomesImaging, Three-DimensionalIntracellular SpaceLuminescent ProteinsMicroscopySensitivity and SpecificityTime FactorsAntibodiesLuminescent Proteins

Identifiers

PMID18835896
PMCPMC2599831

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.